Add module stainwarpy/transformsegmask#9778
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tckumarasekara merged 8 commits intonf-core:masterfrom Feb 13, 2026
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SPPearce
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Feb 13, 2026
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This looks fine, just a minor comment about the versions channel name.
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Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
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This PR adds,
stainwarpy
modules for registration of H&E tissue images with their corresponding multiplexed images and to transform the segmentation masks of one image type to be able to use with the other type.
Note: output files are non-deterministic between runs due to metadata (ef: UUIDs) and minor floating-point differences.
PR checklist
Closes #9703
topic: versions- See version_topicslabelnf-core modules test <MODULE> --profile dockernf-core modules test <MODULE> --profile singularitynf-core modules test <MODULE> --profile condanf-core subworkflows test <SUBWORKFLOW> --profile dockernf-core subworkflows test <SUBWORKFLOW> --profile singularitynf-core subworkflows test <SUBWORKFLOW> --profile conda