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Pull requests: nf-core/modules

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206 Open 8,713 Closed
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Pull requests list

feat (closes #7246): add new component: leafcutter/differentialsplicing
#12271 opened Jul 7, 2026 by JTL-lab Contributor Loading…
14 of 17 tasks
1
RGI/BWT: add files to generate actual result size/s
#12270 opened Jul 7, 2026 by nickp60 Contributor Loading…
4 of 17 tasks
Add rclone check and checksum Ready for Review
#12269 opened Jul 7, 2026 by atrigila Contributor Loading…
@atrigila @delfiterradas
Remove versions block from trgt and fix tests size/m
#12268 opened Jul 7, 2026 by SPPearce Contributor Loading…
1
Swap trycycler to topic size/m
#12266 opened Jul 7, 2026 by SPPearce Contributor • Draft
1
Swap tsebra to topics size/m
#12265 opened Jul 7, 2026 by SPPearce Contributor Loading…
Swap transdecoder to topics size/m
#12264 opened Jul 7, 2026 by SPPearce Contributor Loading…
Swap topas to topic size/m
#12263 opened Jul 7, 2026 by SPPearce Contributor Loading…
Swap verifybamid to topic size/m
#12262 opened Jul 7, 2026 by SPPearce Contributor Loading…
Update to topic motus/*
#12261 opened Jul 7, 2026 by LouisLeNezet Contributor Loading…
17 tasks
4
@LouisLeNezet
add new module: aardvark/compare
#12260 opened Jul 7, 2026 by kubranarci Contributor Loading…
9 of 17 tasks
@kubranarci
6
Add meta maps to cellranger ref modules and downstream consumers
#12257 opened Jul 7, 2026 by nictru Contributor Loading…
13
Update to topic metaspace/*
#12247 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
1
Update to topic metamaps/*
#12246 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
4
new module: fastaguard
#12239 opened Jul 3, 2026 by ehsanestaji Contributor Loading…
14 of 15 tasks
9
Add new subworkflow: ubam_align_minimap2
#12238 opened Jul 3, 2026 by manascripts Member Loading…
7 of 17 tasks
Update deacon module
#12236 opened Jul 3, 2026 by sofstam Contributor Loading…
17 tasks
Add subworkflow: fastq_align_minimap2 Ready for Review size/m
#12235 opened Jul 3, 2026 by manascripts Member Loading…
8 of 17 tasks
gstama_polyacleanup: Fixed regression - Fixing output glob awaiting-changes will be closed after 30 days
#12228 opened Jul 2, 2026 by sguizard Contributor Loading…
3
Add ciri2 module draft
#12224 opened Jul 1, 2026 by razmia02 • Draft
17 tasks
Added nf-core module presto/pairseq Ready for Review
#12222 opened Jul 1, 2026 by Vivian0105 Contributor Loading…
17 tasks
2
update telescope version to 1.0.4
#12218 opened Jul 1, 2026 by hanalysis Contributor Loading…
10
Seqkit replace - fix #9647 and #9646 awaiting-changes will be closed after 30 days
#12213 opened Jul 1, 2026 by ammaraziz Contributor Loading…
1
1
Update: pangolin modules awaiting-changes will be closed after 30 days
#12211 opened Jul 1, 2026 by ammaraziz Contributor Loading…
6
Update dependency nextflow-io/nextflow to v25.10.6 size/xs
#12210 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
ProTip! Exclude everything labeled bug with -label:bug.