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@nvnieuwk, I'm obtaining linting errors that I cannot reproduce when I lint the module locally. What am I missing? |
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muffato
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Mar 30, 2026
| script: | ||
| def args = task.ext.args ?: '' | ||
| def args2 = task.ext.args2 ?: '' | ||
| def args3 = task.ext.args3 ?: "bcf" |
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args* are only used for general command-line arguments.
The replacement for ext.suffix is making an extra field in one of existing input channels, or making a new input channel.
See the wget module for an example.
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Thank you, Matthieu! I will change it accordingly
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This PR bumps the version of delly call from 1.3.3 to 1.7.3 and makes use of its thread command line option.
PR checklist
nf-core modules test <MODULE> --profile dockernf-core modules test <MODULE> --profile singularitynf-core modules test <MODULE> --profile conda