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Bump the uv group with 20 updates#32

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Feb 3, 2026
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Bump the uv group with 20 updates#32
d33bs merged 1 commit intomainfrom
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Bumps the uv group with 20 updates:

Package From To
bioio 3.0.0 3.2.0
bioio-ome-zarr 3.0.3 3.2.1
fire 0.7.0 0.7.1
matplotlib 3.10.7 3.10.8
numpy 2.2.6 2.4.2
pandas 2.2.3 3.0.0
pillow 12.0.0 12.1.0
pyarrow 22.0.0 23.0.0
pyvista 0.46.4 0.46.5
trame-vtk 2.10.0 2.10.3
trame-vuetify 3.1.0 3.2.1
vortex-data 0.57.2 0.58.0
poethepoet 0.34.0 0.40.0
pytest 8.3.5 9.0.2
myst-nb 1.2.0 1.3.0
sphinx 8.2.3 9.0.4
black 25.1.0 26.1.0
ipykernel 6.29.5 7.1.0
jupyterlab 4.4.2 4.5.3
jupytext 1.17.1 1.19.1

Updates bioio from 3.0.0 to 3.2.0

Release notes

Sourced from bioio's releases.

v3.2.0

Description

We have moved away from our plugin priority being determined by install time towards a default ordering. Additionally the reader parameter of BioImage now takes a sequence of readers as a priority list for tighter control. See specifics of our default ordering policy HERE.

What's Changed

Full Changelog: bioio-devs/bioio@v3.1.0...v3.2.0

v3.1.0

Description

Version 3.1.0 adds in the BioImage.dimension_properties property which provides Per-dimension metadata describing semantic meaning and units.

What's Changed

New Contributors

Full Changelog: bioio-devs/bioio@v3.0.0...v3.1.0

Commits
  • 808e5d5 Merge pull request #162 from bioio-devs/feature/plugin-priority
  • b333927 bump base
  • 3d3f727 update mock typing
  • aba59f3 update determine_plugin docstring
  • 847a9a8 explicit reader param
  • 2c0e178 Merge pull request #168 from bioio-devs/feature/dummy-plugin-refactor
  • 2080d3b fix typo
  • 3e8bbb1 Merge branch 'main' into feature/plugin-priority
  • c817121 refactor conftest
  • 9dc5c2c Merge pull request #167 from bioio-devs/bugfix/docs-changelog
  • Additional commits viewable in compare view

Updates bioio-ome-zarr from 3.0.3 to 3.2.1

Release notes

Sourced from bioio-ome-zarr's releases.

v3.2.1

Description

Minor bugfixes and the addition of dimension_names at the image level, per the OME-Zarr spec.

What's Changed

New Contributors

Full Changelog: bioio-devs/bioio-ome-zarr@v3.2.0...v3.2.1

v3.2.0

Description

Adds support for dimension_properties to allow users to access multiscales axis metadata.

What's Changed

Full Changelog: bioio-devs/bioio-ome-zarr@v3.1.0...v3.2.0

v3.1.0

BioIO OME-Zarr v3.1.0 Release

We're pleased to announce the release of bioio-ome-zarr v3.1.0.

Has writing Zarr files taken forever for you?! This update delivers significant performance improvements to the OME-Zarr writer, especially for multi-resolution datasets. The improvements come from new optimizations in how the writer constructs resolution levels and schedules work for Dask.

Summary of Performance Improvements:

  • ~1.8× faster writes at Level 1
  • ~7× faster writes for 5-level multiscale pyramids
  • Additional resolution levels add almost no extra runtime thanks to Dask’s optimized task graph and lazy scheduling
  • Note: This is for writing a single scene of a larger file not the whole file.

Data Fidelity Note

Level 0 and Level 1 are identical to previous versions. Lower levels (L2–L5) may show minor pixel-level differences due to the updated downsampling strategy. These differences are visually negligible, but worth noting.

What's Changed

... (truncated)

Commits
  • 9b56530 Merge pull request #127 from bioio-devs/feature/ome-zarr-models-validation
  • 4f25139 specific image validation
  • 097eb95 feature/ome-zarr-models-validation
  • c7168a6 Merge pull request #125 from TimMonko/patch-1
  • a05731f Merge branch 'main' into patch-1
  • 6d9aa58 Merge pull request #126 from bioio-devs/dependabot/github_actions/actions/upl...
  • 6826c2f ci(dependabot): bump actions/upload-artifact from 5 to 6
  • 9fb0c5e fix project urls
  • 07a33f2 Merge pull request #115 from bioio-devs/feature/dimension-properties
  • a50f405 add warning about setting channel
  • Additional commits viewable in compare view

Updates fire from 0.7.0 to 0.7.1

Release notes

Sourced from fire's releases.

Python Fire v0.7.1

What's Changed

  • Use Neutral theme for IPython Inspector, supporting newer IPython versions in google/python-fire#588
  • Call inspectutils.GetClassAttrsDict on component, not None in google/python-fire#606
  • Move to pyproject.toml, adding wheel support in pypi
  • Use ty in place of pytype
  • Update requirements @​dependabot[bot]

Full Changelog: google/python-fire@v0.7.0...v0.7.1

Commits

Updates matplotlib from 3.10.7 to 3.10.8

Release notes

Sourced from matplotlib's releases.

REL: v3.10.8

This is a bugfix release in the 3.10.x series.

The primary highlights of this release are:

  • Properly allow freethreaded mode in the MacOS backend
  • Better error handling for MacOS backend
Commits
  • 1392cbe REL: v3.10.8
  • 0b9ebb3 Doc release prep v3.10.8
  • bc7b5c4 Merge branch 'v3.10.7-doc' into v3.10.x
  • 86b38d3 Github stats v3.10.8
  • 9512188 Merge pull request #30717 from meeseeksmachine/auto-backport-of-pr-30714-on-v...
  • d300769 Backport PR #30714: FIX: Gracefully handle numpy arrays as input to check_in_...
  • 799bc95 Merge pull request #30711 from ngoldbaum/v3.10.x
  • 134000b Merge pull request #30697 from ngoldbaum/fix-plotting-on-worker-threads
  • 5b8e219 TST: Run macosx backends in a subprocess
  • 878e71a Backport PR #29810: Declare free-threaded support in MacOS backend extension ...
  • Additional commits viewable in compare view

Updates numpy from 2.2.6 to 2.4.2

Release notes

Sourced from numpy's releases.

2.4.2 (Feb 1, 2026)

NumPy 2.4.2 Release Notes

The NumPy 2.4.2 is a patch release that fixes bugs discovered after the 2.4.1 release. Highlights are:

  • Fixes memory leaks
  • Updates OpenBLAS to fix hangs

This release supports Python versions 3.11-3.14

Contributors

A total of 9 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Charles Harris
  • Daniel Tang +
  • Joren Hammudoglu
  • Kumar Aditya
  • Matti Picus
  • Nathan Goldbaum
  • Ralf Gommers
  • Sebastian Berg
  • Vikram Kumar +

Pull requests merged

A total of 12 pull requests were merged for this release.

  • #30629: MAINT: Prepare 2.4.x for further development
  • #30636: TYP: arange: accept datetime strings
  • #30657: MAINT: avoid possible race condition by not touching os.environ...
  • #30700: BUG: validate contraction axes in tensordot (#30521)
  • #30701: DOC: __array_namespace__info__: set_module not __module__ (#30679)
  • #30702: BUG: fix free-threaded PyObject layout in replace_scalar_type_names...
  • #30703: TST: fix limited API example in tests for latest Cython
  • #30709: BUG: Fix some bugs found via valgrind (#30680)
  • #30712: MAINT: replace ob_type access with Py_TYPE in PyArray_CheckExact
  • #30713: BUG: Fixup the quantile promotion fixup
  • #30736: BUG: fix thread safety of array_getbuffer (#30667)
  • #30737: backport scipy-openblas version change

2.4.1 (Jan 10, 2026)

NumPy 2.4.1 Release Notes

The NumPy 2.4.1 is a patch release that fixes bugs discoved after the 2.4.0 release. In particular, the typo SeedlessSequence is preserved to enable wheels using the random Cython API and built against NumPy < 2.4.0 to run without errors.

... (truncated)

Changelog

Sourced from numpy's changelog.

This is a walkthrough of the NumPy 2.4.0 release on Linux, which will be the first feature release using the numpy/numpy-release <https://github.com/numpy/numpy-release>__ repository.

The commands can be copied into the command line, but be sure to replace 2.4.0 with the correct version. This should be read together with the :ref:general release guide <prepare_release>.

Facility preparation

Before beginning to make a release, use the requirements/*_requirements.txt files to ensure that you have the needed software. Most software can be installed with pip, but some will require apt-get, dnf, or whatever your system uses for software. You will also need a GitHub personal access token (PAT) to push the documentation. There are a few ways to streamline things:

  • Git can be set up to use a keyring to store your GitHub personal access token. Search online for the details.
  • You can use the keyring app to store the PyPI password for twine. See the online twine documentation for details.

Prior to release

Add/drop Python versions

When adding or dropping Python versions, multiple config and CI files need to be edited in addition to changing the minimum version in pyproject.toml. Make these changes in an ordinary PR against main and backport if necessary. We currently release wheels for new Python versions after the first Python RC once manylinux and cibuildwheel support that new Python version.

Backport pull requests

Changes that have been marked for this release must be backported to the maintenance/2.4.x branch.

Update 2.4.0 milestones

Look at the issues/prs with 2.4.0 milestones and either push them off to a later version, or maybe remove the milestone. You may need to add a milestone.

Check the numpy-release repo

... (truncated)

Commits
  • c81c49f Merge pull request #30757 from charris/prepare-2.4.2
  • b3ae9c5 REL: Prepare for the NumPy 2.4.2 release
  • 9de8984 Merge pull request #30737 from mattip/scipy-openblas-backport
  • b7be329 backport scipy-openblas version change
  • 7ff9863 Merge pull request #30736 from charris/backport-30667
  • 431fffb MAINT: Skip tests that require buffer.
  • 127235f BUG: fix thread safety of array_getbuffer (#30667)
  • 18bdb2e Merge pull request #30713 from charris/backport-30710
  • 41dd751 Merge pull request #30712 from charris/backport-30705
  • 7a278da BUG: Fixup the quantile promotion fixup
  • Additional commits viewable in compare view

Updates pandas from 2.2.3 to 3.0.0

Release notes

Sourced from pandas's releases.

pandas 3.0.0

We are pleased to announce the release of pandas 3.0.0, a major release from the pandas 2.x series. This release includes various new features, bug fixes, and performance improvements, as well as possible breaking changes.

The pandas 3.0 release removed a functionality that was deprecated in previous releases. It is recommended to first upgrade to pandas 2.3 and to ensure your code is working without warnings, before upgrading to pandas 3.0.

Highlights include:

See the announcement blog post and the detailed release notes for a list of all the changes.

Pandas 3.0.0 supports Python 3.11 and higher. The release can be installed from PyPI

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Pandas 3.0.0rc2

No release notes provided.

Pandas 3.0.0rc1

No release notes provided.

Pandas 3.0.0rc0

We are pleased to announce a first release candidate for pandas 3.0.0. If all goes well, we'll release pandas 3.0.0 in a few weeks.

See the [whatsnew][0] for a list of all the changes.

The release is available on conda-forge and PyPI.

The release can be installed from PyPI

python -m pip install --upgrade --pre pandas==3.0.0rc0

Or from conda-forge

conda install -c conda-forge/label/pandas_rc pandas==3.0.0rc0

Please report any issues with the release candidate on the pandas issue tracker.

... (truncated)

Commits
  • 366ccdf RLS: 3.0.0
  • 139f4d0 DOC: split/reorder other enhancements section in 3.0.0 whatsnew notes (#63762)
  • fd2a4f4 TST: assert reading of legacy pickles against current data (#61792)
  • cc0bcaa DOC: update whatsnew section on datetimelike resolution (#63780)
  • 3ddbb49 DOC: remove 2.3.4 whatsnew file from released 3.0 docs (#63779)
  • ee63532 CLN: Create temporary HDF5 file path and HDFStore for pytables tests (#63492)
  • 9512e99 CoW: better chained assignment warning message for update() method (#63500)
  • 1db90d5 API: rename read_iceberg selected_fields keyword to columns (#63748)
  • c9b51fa BUG: .str methods failing on PyArrow using regex with \Z (#63705)
  • 7cff0f4 API: Period.to_timestamp default to microsecond unit (#63760)
  • Additional commits viewable in compare view

Updates pillow from 12.0.0 to 12.1.0

Release notes

Sourced from pillow's releases.

12.1.0

https://pillow.readthedocs.io/en/stable/releasenotes/12.1.0.html

Deprecations

Documentation

Dependencies

Testing

Type hints

... (truncated)

Commits

Updates pyarrow from 22.0.0 to 23.0.0

Release notes

Sourced from pyarrow's releases.

Apache Arrow 23.0.0

Release Notes URL: https://arrow.apache.org/release/23.0.0.html

Apache Arrow 23.0.0 RC2

Release Notes: Release Candidate: 23.0.0 RC2

Commits
  • eafe3a9 MINOR: [Release] Update versions for 23.0.0
  • 45781e8 MINOR: [Release] Update .deb/.rpm changelogs for 23.0.0
  • 365e5ac MINOR: [Release] Update CHANGELOG.md for 23.0.0
  • e33512d GH-48841: [Release][Package] Add GH_TOKEN to rake build step on Linux Packagi...
  • 86d28e9 GH-48838: [Release] Use gh cli to download sources for Linux packages and pub...
  • b6362d0 GH-48582: [CI][GPU][C++][Python] Add new CUDA jobs using the new self-hosted ...
  • 8fb7a53 GH-48827: [CI][Python] Add required xz dependency to emscripten dockerfile (#...
  • 342c5d5 GH-48809: [CI] Fix homebrew-cpp with Mac by using formula-based dependency re...
  • 8955bbf GH-48631: [R] Non-API calls: 'ATTRIB', 'SET_ATTRIB' (#48634)
  • b90a2b8 GH-48314: [Python] Compat with pandas 3.0 changed default datetime unit (#48319)
  • Additional commits viewable in compare view

Updates pyvista from 0.46.4 to 0.46.5

Commits

Updates trame-vtk from 2.10.0 to 2.10.3

Release notes

Sourced from trame-vtk's releases.

v2.10.3 (2026-01-28)

Bug Fixes

  • actor: Prevent serialization of actors without a mapper (b116bc9)

Fix bug where oglmapper wass undefined in traverseOpaquePass for an actor whose visibility got toggled twice

Detailed Changes: v2.10.2...v2.10.3

v2.10.2 (2026-01-08)

Bug Fixes

  • vue-vtk-js: Bump vue-vtk-js to 3.3.4 (62e9712)

Continuous Integration

  • Update baseline for test_rendering_lut and test_big_int (b73e575)

Detailed Changes: v2.10.1...v2.10.2

v2.10.1 (2025-12-15)

Bug Fixes

  • camera: Update vue-vtk-js (582cb80)

Detailed Changes: v2.10.0...v2.10.1

Changelog

Sourced from trame-vtk's changelog.

v2.10.3 (2026-01-28)

Bug Fixes

  • actor: Prevent serialization of actors without a mapper (b116bc9)

Fix bug where oglmapper wass undefined in traverseOpaquePass for an actor whose visibility got toggled twice

v2.10.2 (2026-01-08)

Bug Fixes

  • vue-vtk-js: Bump vue-vtk-js to 3.3.4 (62e9712)

Continuous Integration

  • Update baseline for test_rendering_lut and test_big_int (b73e575)

v2.10.1 (2025-12-15)

Bug Fixes

  • camera: Update vue-vtk-js (582cb80)
Commits
  • 4b98722 2.10.3
  • 68f55fa Merge pull request #98 from Kitware/fix-actor-serialization
  • 2af2f3d SQUASHME: fix(actor): fix actor serialization condition
  • b542475 2.10.2
  • b73e575 ci: update baseline for test_rendering_lut and test_big_int
  • 62e9712 fix(vue-vtk-js): Bump vue-vtk-js to 3.3.4
  • b116bc9 fix(actor): prevent serialization of actors without a mapper
  • ce09dfe 2.10.1
  • 582cb80 fix(camera): update vue-vtk-js
  • See full diff in compare view

Updates trame-vuetify from 3.1.0 to 3.2.1

Release notes

Sourced from trame-vuetify's releases.

v3.2.1 (2026-02-02)

Bug Fixes

  • vuetify3: Fix drawer layout behavior with default value (3e84c57)

Detailed Changes: v3.2.0...v3.2.1

v3.2.0 (2025-12-05)

Features

Detailed Changes: v3.1.0...v3.2.0

Changelog

Sourced from trame-vuetify's changelog.

v3.2.1 (2026-02-02)

Bug Fixes

  • vuetify3: Fix drawer layout behavior with default value (3e84c57)

v3.2.0 (2025-12-05)

Features

Commits

Updates vortex-data from 0.57.2 to 0.58.0

Release notes

Sourced from vortex-data's releases.

0.58.0

Changes

✨ Features

🚀 Performance

  • End DataFusion stream early if file can be pruned away by dynamic expr (#5874) @​AdamGS

🧰 Maintenance

Commits
  • 41bb2bf chore: add overflow tests for unsigned types in BigCast (#5866)
  • 2b6fa95 Feature: Make vortex-tui a library (#5779)
  • ace4717 End DataFusion stream early if file can be pruned away by dynamic expr (#5874)
  • See full diff in compare view

Updates poethepoet from 0.34.0 to 0.40.0

Release notes

Sourced from poethepoet's releases.

0.40.0

Enhancements

Fixes

Code improvements

Full Changelog: nat-n/poethepoet@v0.39.0...v0.40.0

0.39.0

Enhancements

  • Add support for uv executor options by @​rochacbruno and @​nat-n in nat-n/poethepoet#327
    • feat: add various options to the uv executor to be passed to the uv run command
    • feat: allow task executor to be configure with just the type as a string
    • feat executor options to be set at runtime via the new --executor-opt cli global option
    • feat: allow inheritance of compatible executor options from global to task to runtime
    • refactor: extend PoeOptions to support annotating config fields with a config_name to parse, separate from the attribute name
    • refactor: some micro-optimizations to PoeOptions and AnnotationType
    • doc: Add guide for replacing tox with poe + uv
    • doc: tidy up executor docs
    • doc: fix typo in doc for expr task
    • test: improve test coverage of PoeOptions
    • test: disable some test cases on windows that are too flaky

New Contributors

Full Changelog: nat-n/poethepoet@v0.38.0...v0.39.0

0.38.0

Enhancements

Breaking changes

... (truncated)

Commits
  • 0a7247d Bump version to 0.40.0
  • 312e74a feat: Add choices option to constrain named arguments (#348)
  • 5e0b3e5 feat: support ignore_fail on execution task types and ref tasks (#347)
  • a3c97e1 test: ensure the test virtual environment is always removed (#346)
  • bc04e2f feat: support capture_output on ref tasks (#343)
  • f7b82ef fix: global executor option (#340)
  • 8e7b116 fix: handle SIGHUP and SIGBREAK signals to stop tasks (#344)
  • 8e51f2b refactor: modernize type annotations (#339)
  • 72a9225 fix: set uv to quiet during shell completion (#338)
  • c6c7306 feat: allow optional envfiles without warnings (#337)
  • Additional commits viewable in compare view

Updates pytest from 8.3.5 to 9.0.2

Release notes

Sourced from pytest's releases.<...

Description has been truncated

@dependabot dependabot bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Feb 3, 2026
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d33bs commented Feb 3, 2026

@dependabot rebase

@dependabot
Bump the uv group with 20 updates
211d1f1 
Bumps the uv group with 20 updates:

| Package | From | To |
| --- | --- | --- |
| [bioio](https://github.com/bioio-devs/bioio) | `3.0.0` | `3.2.0` |
| [bioio-ome-zarr](https://github.com/bioio-devs/bioio-ome-zarr) | `3.0.3` | `3.2.1` |
| [fire](https://github.com/google/python-fire) | `0.7.0` | `0.7.1` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.10.7` | `3.10.8` |
| [numpy](https://github.com/numpy/numpy) | `2.2.6` | `2.4.2` |
| [pandas](https://github.com/pandas-dev/pandas) | `2.2.3` | `3.0.0` |
| [pillow](https://github.com/python-pillow/Pillow) | `12.0.0` | `12.1.0` |
| [pyarrow](https://github.com/apache/arrow) | `22.0.0` | `23.0.0` |
| [pyvista](https://github.com/pyvista/pyvista) | `0.46.4` | `0.46.5` |
| [trame-vtk](https://github.com/Kitware/trame-vtk) | `2.10.0` | `2.10.3` |
| [trame-vuetify](https://github.com/Kitware/trame-vuetify) | `3.1.0` | `3.2.1` |
| [vortex-data](https://github.com/spiraldb/vortex) | `0.57.2` | `0.58.0` |
| [poethepoet](https://github.com/nat-n/poethepoet) | `0.34.0` | `0.40.0` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.3.5` | `9.0.2` |
| [myst-nb](https://github.com/executablebooks/myst-nb) | `1.2.0` | `1.3.0` |
| [sphinx](https://github.com/sphinx-doc/sphinx) | `8.2.3` | `9.0.4` |
| [black](https://github.com/psf/black) | `25.1.0` | `26.1.0` |
| [ipykernel](https://github.com/ipython/ipykernel) | `6.29.5` | `7.1.0` |
| [jupyterlab](https://github.com/jupyterlab/jupyterlab) | `4.4.2` | `4.5.3` |
| [jupytext](https://github.com/mwouts/jupytext) | `1.17.1` | `1.19.1` |


Updates `bioio` from 3.0.0 to 3.2.0
- [Release notes](https://github.com/bioio-devs/bioio/releases)
- [Commits](bioio-devs/bioio@v3.0.0...v3.2.0)

Updates `bioio-ome-zarr` from 3.0.3 to 3.2.1
- [Release notes](https://github.com/bioio-devs/bioio-ome-zarr/releases)
- [Commits](bioio-devs/bioio-ome-zarr@v3.0.3...v3.2.1)

Updates `fire` from 0.7.0 to 0.7.1
- [Release notes](https://github.com/google/python-fire/releases)
- [Commits](google/python-fire@v0.7.0...v0.7.1)

Updates `matplotlib` from 3.10.7 to 3.10.8
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.10.7...v3.10.8)

Updates `numpy` from 2.2.6 to 2.4.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.2.6...v2.4.2)

Updates `pandas` from 2.2.3 to 3.0.0
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v2.2.3...v3.0.0)

Updates `pillow` from 12.0.0 to 12.1.0
- [Release notes](https://github.com/python-pillow/Pillow/releases)
- [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst)
- [Commits](python-pillow/Pillow@12.0.0...12.1.0)

Updates `pyarrow` from 22.0.0 to 23.0.0
- [Release notes](https://github.com/apache/arrow/releases)
- [Commits](apache/arrow@apache-arrow-22.0.0...apache-arrow-23.0.0)

Updates `pyvista` from 0.46.4 to 0.46.5
- [Release notes](https://github.com/pyvista/pyvista/releases)
- [Commits](pyvista/pyvista@v0.46.4...v0.46.5)

Updates `trame-vtk` from 2.10.0 to 2.10.3
- [Release notes](https://github.com/Kitware/trame-vtk/releases)
- [Changelog](https://github.com/Kitware/trame-vtk/blob/master/CHANGELOG.md)
- [Commits](Kitware/trame-vtk@v2.10.0...v2.10.3)

Updates `trame-vuetify` from 3.1.0 to 3.2.1
- [Release notes](https://github.com/Kitware/trame-vuetify/releases)
- [Changelog](https://github.com/Kitware/trame-vuetify/blob/master/CHANGELOG.md)
- [Commits](Kitware/trame-vuetify@v3.1.0...v3.2.1)

Updates `vortex-data` from 0.57.2 to 0.58.0
- [Release notes](https://github.com/spiraldb/vortex/releases)
- [Commits](vortex-data/vortex@0.57.2...0.58.0)

Updates `poethepoet` from 0.34.0 to 0.40.0
- [Release notes](https://github.com/nat-n/poethepoet/releases)
- [Commits](nat-n/poethepoet@v0.34.0...v0.40.0)

Updates `pytest` from 8.3.5 to 9.0.2
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.5...9.0.2)

Updates `myst-nb` from 1.2.0 to 1.3.0
- [Release notes](https://github.com/executablebooks/myst-nb/releases)
- [Changelog](https://github.com/executablebooks/MyST-NB/blob/main/CHANGELOG.md)
- [Commits](executablebooks/MyST-NB@v1.2.0...v1.3.0)

Updates `sphinx` from 8.2.3 to 9.0.4
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/v9.0.4/CHANGES.rst)
- [Commits](sphinx-doc/sphinx@v8.2.3...v9.0.4)

Updates `black` from 25.1.0 to 26.1.0
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](psf/black@25.1.0...26.1.0)

Updates `ipykernel` from 6.29.5 to 7.1.0
- [Release notes](https://github.com/ipython/ipykernel/releases)
- [Changelog](https://github.com/ipython/ipykernel/blob/main/CHANGELOG.md)
- [Commits](ipython/ipykernel@v6.29.5...v7.1.0)

Updates `jupyterlab` from 4.4.2 to 4.5.3
- [Release notes](https://github.com/jupyterlab/jupyterlab/releases)
- [Changelog](https://github.com/jupyterlab/jupyterlab/blob/main/RELEASE.md)
- [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.4.2...@jupyterlab/lsp@4.5.3)

Updates `jupytext` from 1.17.1 to 1.19.1
- [Release notes](https://github.com/mwouts/jupytext/releases)
- [Changelog](https://github.com/mwouts/jupytext/blob/main/CHANGELOG.md)
- [Commits](mwouts/jupytext@v1.17.1...v1.19.1)

---
updated-dependencies:
- dependency-name: bioio
  dependency-version: 3.2.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: bioio-ome-zarr
  dependency-version: 3.2.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: fire
  dependency-version: 0.7.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: matplotlib
  dependency-version: 3.10.8
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: numpy
  dependency-version: 2.4.2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: pandas
  dependency-version: 3.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: uv
- dependency-name: pillow
  dependency-version: 12.1.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: pyarrow
  dependency-version: 23.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: uv
- dependency-name: pyvista
  dependency-version: 0.46.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: trame-vtk
  dependency-version: 2.10.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: trame-vuetify
  dependency-version: 3.2.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: vortex-data
  dependency-version: 0.58.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: poethepoet
  dependency-version: 0.40.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: pytest
  dependency-version: 9.0.2
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: uv
- dependency-name: myst-nb
  dependency-version: 1.3.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: sphinx
  dependency-version: 9.0.4
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: uv
- dependency-name: black
  dependency-version: 26.1.0
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: uv
- dependency-name: ipykernel
  dependency-version: 7.1.0
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: uv
- dependency-name: jupyterlab
  dependency-version: 4.5.3
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: jupytext
  dependency-version: 1.19.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot force-pushed the dependabot/uv/uv-fa5b077ac2 branch from ebd56d1 to 211d1f1 Compare February 3, 2026 16:35
@d33bs d33bs merged commit d30d507 into main Feb 3, 2026
10 checks passed
@d33bs d33bs deleted the dependabot/uv/uv-fa5b077ac2 branch February 3, 2026 16:41
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