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Software gardening...
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Software gardening...
75 followers · 169 following

Achievements

Achievement: Pull Sharkx4Achievement: StarstruckAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Quickdraw

Achievements

Achievement: Pull Sharkx4Achievement: StarstruckAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Quickdraw

Organizations

@conda-forge @cytomining @sphinx-contrib @nf-core @University-of-Colorado-Anschutz-Denver @UCBoulder @CU-DBMI @WayScience @software-gardening

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d33bs/README.md

Hi, I'm Dave 👋

I'm a developer with a passion for software design, collaboration and innovation. Some of my interests include research data engineering, in-memory data flow, and scientific software.

I've been on Github for 13 years. During that time I've contributed to 106 repositories, opened 787 issues, performed 1009 code reviews, and have opened 1006 pull requests.

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  1. cytomining/CytoDataFrame cytomining/CytoDataFrame Public

    An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

    Python 11 2

  2. WayScience/ome-arrow WayScience/ome-arrow Public

    Using OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data.

    Python 4 1

  3. cytomining/CytoTable cytomining/CytoTable Public

    Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

    Python 17 6

  4. cytomining/pycytominer cytomining/pycytominer Public

    Python package for processing image-based profiling data

    Python 135 40

  5. cytomining/coSMicQC cytomining/coSMicQC Public

    Single cell Morphology Quality Control (coSMicQC)

    Python 10 3

  6. software-gardening/almanack software-gardening/almanack Public

    An open-source handbook of applied guidance and tools for sustainable software development and maintenance.

    Jupyter Notebook 23 5