Differential analysis of multi-omics data based on the Tweedie distribution

Data for analysis of the MoTrPAC endurance exercise training study in 6-month-old rats

Omics BioAnalytics - RShiny web app for bioinformatics analyses

Integrating multi-omics data coming from the same physical source (e.g. patient) by taking into account the chromatin configuration of the genome, i.e. the topologically associ-ating domains (TADs)

A pan-cancer morphology atlas linking histological features to molecular and clinical outcomes

Computational pipeline for novel IRD gene discovery — HPO phenotypic clustering, evolutionary profiling (NPP), and multi-omics integration. M.Sc. research, Hebrew University.

NetICS: network-based integration of multi-omics data for prioritizing cancer genes

Multi omics data integration tool

deep learning patient classifier based on patient similarity networks

A study on multi-omic oscillations in Escherichia coli metabolic networks. Journal paper.

Scripts for methylation data qc and performing single and multi-ancestry EWAS.

Patient subgrouping with distinct survival rates via integration of multiomics data on a Grassmann manifold

Documentation analysis and manuscript figures of QuRIE-seq methods paper.

Feature selection in Spark

Multi-omics breast cancer (ER status) classification using TCGA-BRCA - Logistic Regression, Random Forest, XGBoost, SVM - ROC-AUC 0.919

This is a group project

A R package to jointly embed peaks and genes from paired scATAC-seq and scRNA-seq data into a shared low-dimensional space and enable condition comparison.

Documentation analysis and manuscript figures

Survival Analysis on the TCGA-PAAD (The Cancer Genome Atlas-Pancreatic Adenocarcinoma) dataset