Resource for summarizing and tracking new array samples published to NCBI's Gene Expression Omnibus (GEO) database.
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Jan 11, 2023 - Python
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epigenetics-data
Here are 9 public repositories matching this topic...
Repository of tools and analyses used during: "Double and single stranded detection of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore sequencing"
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Jan 27, 2026 - Jupyter Notebook
Fast and efficient conversion of Nanopore modBAM from guppy basecaller to BED files for differential methylation and machine learning predictions
bam-files bioinformatics nanopore pipeline genomics sequencing methylation epigenetics oxford-nanopore cpg basecaller bed-format long-read-sequencing genomic-analysis methylation-analysis guppy oxford-nanopore-data oxford-nanopore-sequencing epigenetics-data modbam
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Feb 1, 2026 - Shell
Histone Marks for COVID infection
bioinformatics epigenetics bioinformatics-pipeline histone bioinformatics-analysis bioinformatics-scripts bioinformatics-tool epigenetics-data histones bioinformatics-common epigenetics-modifications histone-proteomics
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Oct 21, 2026 - Python
Reproducing ChIPDiff’s hidden Markov model to identify changes in H3K27me3 during the differentiation of mouse embryonic stem cells into neural progenitor cells
bioinformatics hidden-markov-model stem-cell-differentiation chip-seq-analysis neurodevelopment epigenetics-data h3k27me3 neural-progenitor-cells
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Sep 10, 2026 - Python
After getting the bed file from the Peak calling, we can annotate and create all downstream analysis of two sets of data
transcription-factors epigenetics chip-seq functional-genomics chip-seq-data chip-seq-analysis regulatory-elements chip-seq-pipeline epigenetics-data schizosaccharomyces-pombe
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Jun 9, 2023 - R
Streamlit app and pipeline: DEA/GSEA-derived Immune Risk Score survival analysis (simulated cohort)
bioinformatics cancer epigenetics bioinformatics-pipeline cancer-genomics cancer-research bioinformatics-analysis bioinformatics-scripts bioinformatics-tool epigenetics-data
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Oct 21, 2026 - Python
Computational workflows for the LACoFD firefighter cfDNA methylation study examining pre/post combustion exposure using WGBS
epigenetics dna-methylation firefighter wgbs cfdna dna-methylation-data wgbs-analysis wgbs-data epigenetics-data occupational-exposure cfdna-profiling wgbs-epigenetics epigenetics-modifications lacofd
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Sep 23, 2026 - Python
Bioinformatic, statistical & ML analysis of Homologous Recombination Deficiency in triple-negative breast cancer
biostatistics bioinformatics-analysis biomedical-data-science applied-machine-learning epigenetics-data
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Aug 16, 2024 - R
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