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Latest release (2.9.0)#1305

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luciansmith merged 164 commits intoreleasefrom
develop
Feb 17, 2026
Merged

Latest release (2.9.0)#1305
luciansmith merged 164 commits intoreleasefrom
develop

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luciansmith and others added 30 commits April 24, 2024 15:10
When introduced in 2022, the idea was for LLJit to eventually replace MCJit.  It seems like it's time to go through with this.
Need to get new save state files every time we update the minor version number of roadrunner.  This (hopefully) puts in a linux version, meaning that only the macs will fail.
Also allow for two different macos versions.
Not sure why the systems were separated?
This way, the action can be run only when we need it.
Should remove 4.3 bajillion warnings.
Warnings indicated we needed 13 more bytes of space to write potentially very large ints.

Also, include more .h files in official list of headers.
The tests assume a certain number of spaces, so just keep that.  We fix the warnings in case there are a ridiculous number, but this is unlikely.
Re-enable 'load valid file' test.
Can't figure out the memory error without a lot more work, so get this set up so it can be re-committed anyway, since there are a lot of other memory errors that *were* fixed, and we need a new release.
The OPTIMIZE_HENRICH_WILBERT test fails on macos14, probably because of the different size of doubles, which just makes a different path.  Try a different value to just see if a different computational path works.
(Previous test didn't work on Windows.)
Previous value didn't work on manulinux.  But worked on Windows and Macs!

Also, fix a delete call that gave a warning to do the proper delete thing.
Need the VS runtime dlls, which are in the bin/ directory.  Remove the bit that was going to do that from the workflow.
Copy Visual Studios DLLs to roadrunner and rrplugins, and install them.
…state.c

This turned out to be because the conserved moiety converter would remove some species references, making the variable they represented disappear.  Added a bit to the converter where if a species reference was removed, we'd add a new parameter with that name and a value of its stoichiometry to the model.
Some models with named stoichiometries couldn't calculate the steady state.
@luciansmith luciansmith merged commit e3e08d1 into release Feb 17, 2026
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3 participants