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@snakemake

Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.7k 635

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 240 208

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 182 32

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    62 15

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 48 47

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 37 11

Repositories

Showing 10 of 66 repositories
  • snakemake-wasm-app Public
    snakemake/snakemake-wasm-app’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 12, 2026
  • snakemake-cluster-profiles Public

    The snakemake-profiles repository is an effort to create configuration profiles for executing Snakemake in specific institutional cluster or compute environments. It is meant to complement the executor plugins, which are designed for specifying execution on general architectures such as SLURM, LSF, etc.

    snakemake/snakemake-cluster-profiles’s past year of commit activity
    0 MIT 2 3 1 Updated Mar 12, 2026
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,720 MIT 635 1,115 (1 issue needs help) 114 Updated Mar 12, 2026
  • snakemake-plugin-catalog Public

    An automatically updated catalog of Snakemake plugins and their documentation

    snakemake/snakemake-plugin-catalog’s past year of commit activity
    Python 3 MIT 10 0 2 Updated Mar 12, 2026
  • snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    snakemake/snakedeploy’s past year of commit activity
    Python 25 MPL-2.0 14 14 6 Updated Mar 12, 2026
  • snakemake-scheduler-plugin-firstfit Public

    A Snakemake scheduler plugin that selects the first jobs that fit available resources.

    snakemake/snakemake-scheduler-plugin-firstfit’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 12, 2026
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 37 MIT 11 4 1 Updated Mar 12, 2026
  • snakemake-interface-storage-plugins Public

    This package provides a stable interface for interactions between Snakemake and its storage plugins.

    snakemake/snakemake-interface-storage-plugins’s past year of commit activity
    Python 2 MIT 11 4 4 Updated Mar 11, 2026
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 240 208 8 27 Updated Mar 11, 2026
  • snakemake-lang-vscode-plugin Public

    Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.

    snakemake/snakemake-lang-vscode-plugin’s past year of commit activity
    TypeScript 22 MIT 18 9 1 Updated Mar 11, 2026
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