All pull requests

Pull requests

• feat: add dsb norm

  #4443·Intron7 opened Oct 26, 2026Member·3 of 5 tasks·

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  · 1.13.0
  1

• feat: add WNN

  #4428·Intron7 opened Oct 21, 2026Member·

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  · 1.13.0
  1

• perf: sample discarded counts in downsample_counts when keeping most of the data

  #4427·carlosvega opened Oct 21, 2026·5 tasks done·

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  · 1.13.0
  4

• perf: numba kernels for pp.harmony_integrate

  #4424·timtreis opened Oct 17, 2026Member·

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  3

• fix: symmetric gauss connectivities for pynndescent / sparse distances

  #4423·syahra712 opened Oct 16, 2026·3 of 5 tasks·

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  1

  2

• Zb/markers de api

  #4400·zboldyga opened Oct 6, 2026Contributor·2 tasks·

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  2

• perf: avoid dense BasePlot aggregation

  #4399·srikarjy opened Oct 3, 2026·2 of 3 tasks·

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  1

  1

• fix: stabilize regress_out for ill-conditioned covariates

  #4388·Silas-Zeng opened Sep 29, 2026·

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  · 1.12.7
  7

• fix: multi-column groupby crashing on non-string observations

  #4385·barlowa124 opened Sep 28, 2026·

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  · 1.12.7
  1

  4

• fix: honor user-supplied hue in sc.pl.violin

  #4383·barlowa124 opened Sep 28, 2026·2 tasks done·

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  · 1.12.7
  1

  3

• feat: add poisson_gene_selection flavor to pp.highly_variable_genes

  #4379·Sizerta opened Sep 26, 2026·3 tasks done·

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  1

  1

• feat: sample score_genes controls per gene

  #4373·Sizerta opened Sep 21, 2026·2 tasks done·

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  1

  4

• fix: reject mismatched raw var names in QC metrics

  #4364·AkshajKashyap opened Sep 13, 2026·2 of 3 tasks·

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  1

  1

• fix: correct binary logistic marker score direction

  #4348·dnncha opened Sep 8, 2026·

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  · 1.12.7
  6

• fix: run t-test on log values regardless of mean_in_log_space

  #4337·cindykrafft opened Sep 2, 2026·2 of 3 tasks·

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  1

  1

• fix: sc.pl.paga cax handling with multiple colors

  #4319·AdvaitS opened Aug 22, 2026·2 of 3 tasks·

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  1

  1

• feat: Add ncols parameter to pl.paga

  #4317·AdvaitS opened Aug 22, 2026·2 of 3 tasks·

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  1

  1

• docs: document norm parameter for embedding scatter plots

  #4297·Zethson opened Aug 14, 2026Member·

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  · 1.12.7
  1

  1

• feat: support acc shortcuts

  #4288·flying-sheep opened Aug 11, 2026Member·1 of 3 tasks·

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  · 1.13.0
  7

  

• Update template to v0.8.0

  #4221·scverse-bot opened Jul 17, 2026·

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  1

• feat: pp.scale allow selecting correction

  #4220·AxelMcKenna opened Jul 16, 2026Contributor·2 of 3 tasks·

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  2

• feat: add min_cells parameter to dotplot

  #4218·AlsoTheZv3n opened Jul 15, 2026·

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  1

• feat: add Array API support via array-api-compat

  #4179·amalia-k510 opened Jun 25, 2026Contributor·

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  · 1.13.0
  43

• feat: add networkit flavor for parallel Leiden clustering

  #4170·amalia-k510 opened Jun 22, 2026Contributor·

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  20

• fix(experimental.pp.hvg): scope per-batch clip threshold in pearson_residuals HVG

  Area – Preprocessing 🧼
  #4138·Arshammik opened May 23, 2026·

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  · 1.12.7
  5