ci: pre-commit autoupdate

.github/workflows/ci.yml

@@ -20,7 +20,7 @@ jobs:
     steps:
       - uses: actions/checkout@v6
         with: { fetch-depth: 0, filter: "blob:none" }
-      - uses: astral-sh/setup-uv@v7
+      - uses: astral-sh/setup-uv@v8.2.0
       - name: Get test environments
         id: get-envs
         run: |
@@ -39,6 +39,8 @@ jobs:
   test:
     name: Tests
     needs: get-environments
+    permissions:
+      id-token: write  # for codecov OIDC
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
@@ -52,7 +54,7 @@ jobs:
     steps:
       - uses: actions/checkout@v6
         with: { fetch-depth: 0, filter: "blob:none" }
-      - uses: astral-sh/setup-uv@v7
+      - uses: astral-sh/setup-uv@v8.2.0
         with:
           python-version: ${{ matrix.env.python }}
       - name: create environment
@@ -63,27 +65,29 @@ jobs:
           # https://github.com/codecov/codecov-cli/issues/648
           uvx hatch run ${{ matrix.env.name }}:coverage xml
           rm test-data/.coverage
-      - uses: codecov/codecov-action@v5
+      - uses: codecov/codecov-action@v7
         with:
           name: ${{ matrix.env.name }}
           fail_ci_if_error: true
           files: test-data/coverage.xml
-          token: ${{ secrets.CODECOV_TOKEN }}
+          use_oidc: true
   bench:
     name: CPU Benchmarks
+    permissions:
+      id-token: write  # for codspeed OIDC
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v6
         with: { fetch-depth: 0, filter: "blob:none" }
       - uses: actions/setup-python@v6
         with:
           python-version: '3.14'
-      - uses: astral-sh/setup-uv@v7
+      - uses: astral-sh/setup-uv@v8.2.0
       - run: uv pip install --system --group=test -e .[full]
-      - uses: CodSpeedHQ/action@v3
+      - uses: CodSpeedHQ/action@v4
         with:
+          mode: simulation
           run: pytest -m benchmark --codspeed -n auto
-          token: ${{ secrets.CODSPEED_TOKEN }}
   import:
     name: Import Tests
     runs-on: ubuntu-latest
@@ -93,7 +97,7 @@ jobs:
       - uses: actions/setup-python@v6
         with:
           python-version: '3.14'
-      - uses: astral-sh/setup-uv@v7
+      - uses: astral-sh/setup-uv@v8.2.0
       - run: uv pip install --system -e .
       - run: python -c 'import fast_array_utils as fau; print(fau.__all__)'
       - run: uv pip install --system -e .[testing]
@@ -106,9 +110,7 @@ jobs:
     steps:
       - uses: actions/checkout@v6
         with: { fetch-depth: 0, filter: "blob:none" }
-      - uses: j178/prek-action@v1
-        with:
-          working-directory: ${{ github.workspace }}
+      - uses: j178/prek-action@v2
   pass:
     name: All Checks
     if: always()

.pre-commit-config.yaml

@@ -6,7 +6,7 @@ repos:
   - id: trailing-whitespace
   - id: no-commit-to-branch
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.15.15
+  rev: v0.15.16
   hooks:
   - id: ruff-check
     args: [--fix, --exit-non-zero-on-fix]
@@ -29,7 +29,7 @@ repos:
     pass_filenames: false
     additional_dependencies:
     - anndata>=0.12
-    - array-api-compat>=1.13
+    - array-api-compat>=1.13,!=1.15.0 # https://github.com/data-apis/array-api-compat/issues/436
     - dask>=2026.1
     - h5py>=3.15
     - jax>=0.10
@@ -40,6 +40,7 @@ repos:
     - scikit-learn>=1.8
     - scipy-stubs>=1.17
     - sphinx>=9
+    - types-array-api>=1.3
     - types-docutils>=0.22
     - zarr>=3.1
 ci:

.vscode/settings.json

@@ -17,6 +17,6 @@
     },
     "python.testing.pytestArgs": ["-vv", "--color=yes", "-m", "not benchmark"],
     "python.testing.pytestEnabled": true,
-    "python-envs.defaultEnvManager": "flying-sheep.hatch:hatch",
-    "python-envs.defaultPackageManager": "flying-sheep.hatch:hatch",
+    "python-envs.defaultEnvManager": "pypa.hatch:hatch",
+    "python-envs.defaultPackageManager": "pypa.hatch:hatch",
 }

pyproject.toml

@@ -35,12 +35,14 @@ urls.Documentation = "https://icb-fast-array-utils.readthedocs-hosted.com/"
 entry-points.pytest11.fast_array_utils = "testing.fast_array_utils.pytest"
 
 [dependency-groups]
+dev = [ "types-array-api", "types-docutils" ]
 test = [
   "anndata",
   "fast-array-utils[full]",
   "jax",
   "jaxlib",
   "scikit-learn",
+  { include-group = "dev" },
   { include-group = "test-min" },
 ]
 doc = [

src/fast_array_utils/stats/_generic_ops.py

@@ -14,6 +14,7 @@
 if TYPE_CHECKING:
     from typing import Any, Literal
 
+    from array_api.latest import Array as AArray
     from numpy.typing import DTypeLike, NDArray
 
     from ..typing import CpuArray, DiskArray, GpuArray
@@ -111,7 +112,7 @@ def _generic_op_dask(
 
 
 @generic_op.register(types.HasArrayNamespace)
-def _generic_op_array_api[A: types.HasArrayNamespace](
+def _generic_op_array_api[A: AArray[object, object]](
     x: A,
     /,
     op: Ops,

src/fast_array_utils/stats/_power.py

@@ -10,6 +10,7 @@
 
 
 if TYPE_CHECKING:
+    from array_api.latest import Array as AArray
     from numpy.typing import DTypeLike
 
     from fast_array_utils.typing import CpuArray, GpuArray
@@ -36,11 +37,11 @@ def _power_numpy_cupy(x: np.ndarray, n: int, /, dtype: DTypeLike | None = None)
 
 
 @_power.register(types.HasArrayNamespace)
-def _power_array_api(x: types.HasArrayNamespace, n: int, /, dtype: DTypeLike | None = None) -> types.HasArrayNamespace:
+def _power_array_api[A: AArray[object, object]](x: A, n: int, /, dtype: DTypeLike | None = None) -> A:
     import array_api_compat
 
     xp = array_api_compat.array_namespace(x)
-    return xp.pow(x, n) if dtype is None else xp.pow(xp.astype(x, dtype), n)  # type: ignore[no-any-return]
+    return xp.pow(x, n) if dtype is None else xp.pow(xp.astype(x, dtype), n)
 
 
 @_power.register(types.CSBase | types.CupyCSMatrix)