Issues

• Conda install failing

  sanger-pathogens/Fastaq#88 · Filter by author fgvieira opened on Apr 11, 2025
  1

• Tests pass with pytest

  sanger-pathogens/Fastaq#84 · Filter by author TheChymera opened on Jan 14, 2023

• For sequence_trim it is unclear what the format for trim_seqs should be

  sanger-pathogens/Fastaq#83 · Filter by author idwProxima opened on Mar 22, 2022
  2

• Shredded Fastaq sequences generate weird srst2 output for most and antibioitc resistance genotyping

  sanger-pathogens/Fastaq#82 · Filter by author UzmaBasit opened on Jul 6, 2021

• Split input files into batches

  sanger-pathogens/Fastaq#76 · Filter by author mmokrejs opened on Dec 29, 2018

• fastaq: ValueError: empty range for randrange() (191,191, 0)

  sanger-pathogens/Fastaq#75 · Filter by author mmokrejs opened on Dec 14, 2018

• fastq reverse?

  sanger-pathogens/Fastaq#71 · Filter by author galud27 opened on Mar 19, 2018

• Ambiguous nucleotides treated literally by sequence_trim

  sanger-pathogens/Fastaq#69 · Filter by author ChrisHIV opened on Mar 6, 2018