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Rat Genome Database

7 followers
rgd.web@mcw.edu

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rgd-core-library rgd-core-library Public

Domain layer and shared components

Java
rgd-web-application rgd-web-application Public

Code used by the RGD web site and tools

JavaScript 2
rgd-web-services rgd-web-services Public

Swagger implementation

Java
rgd-annotation-files rgd-annotation-files Public

GO annotation files in GAF, GPAD and GPI format

Repositories

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Showing 10 of 154 repositories

human-proteome-map-pipeline Public
Load Human Proteome Map ids for human genes

rat-genome-database/human-proteome-map-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 19, 2026
data-qc-pipeline Public
General purpose qc reports on data integrity.

rat-genome-database/data-qc-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 19, 2026
hrdp-variant-load-pipeline Public
Load the HRDP Variants into variant visualizer

rat-genome-database/hrdp-variant-load-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 19, 2026
ensembl-pipeline Public
Downloads genes from Ensembl and compares them against genes in RGD.

rat-genome-database/ensembl-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 19, 2026
rna-central-pipeline Public
Import RNACentral IDs as 'external database ids' for all non-coding genes in RGD to generate links to RNACentral database.

rat-genome-database/rna-central-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 19, 2026
omim-annotation-pipeline Public
Loads OMIM ids and then creates OMIM disease annotations.

rat-genome-database/omim-annotation-pipeline’s past year of commit activity

Java 2 GPL-3.0 0 0 0 Updated May 19, 2026
phenominer-expected-ranges-pipeline Public
Expected Ranges for Clinical Measurements

rat-genome-database/phenominer-expected-ranges-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 19, 2026
full-record-index-pipeline Public
Precomputes summaries from experiment record data into FULL_RECORD_INDEX table for subsequent use by phenominer tool.

rat-genome-database/full-record-index-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 19, 2026
mutant-strain-annotation-pipeline Public
Propagate disease and phenotype annotations from strains to alleles and genes.

rat-genome-database/mutant-strain-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 19, 2026
qtl-qc-pipeline Public

rat-genome-database/qtl-qc-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 19, 2026

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