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v1.0.0 Release - #1
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Copilot review overview
🟡 Changes recommended
The generated SBOM is nonconformant, release gates remain incomplete, and an accessibility issue is unresolved.
Review effort: Balanced
Findings: 1
Open (3)
What changed in this PR
Establishes the v1.0.0 browser release, including scientific computation, interactive visualization, exports, testing, documentation, and release automation.
Changes:
- Adds the TypeScript/WebAssembly browser implementation and comprehensive tests.
- Adds release packaging, SBOM, CI, deployment, and reproducibility tooling.
- Adds documentation, example data, scientific validation, and benchmark evidence.
| File | Description |
|---|---|
web/vite.config.ts |
Configures Vite and version injection |
web/tsconfig.json |
Defines strict TypeScript compilation |
web/tests/zip.test.ts |
Tests ZIP generation |
web/tests/worker-jobs.test.ts |
Tests worker lifecycle |
web/tests/viewport.test.ts |
Tests viewport transformations |
web/tests/tile.test.ts |
Tests tile transposition |
web/tests/sharding.test.ts |
Tests bounded sharding |
web/tests/sequence-metadata.test.ts |
Tests sequence identifiers |
web/tests/resource-plan.test.ts |
Tests resource admission |
web/tests/renderer.test.ts |
Tests rendering defaults and sizing |
web/tests/refinement.test.ts |
Tests refinement scheduling |
web/tests/plot-mode.test.ts |
Tests plot planning |
web/tests/palettes.test.ts |
Tests application palettes |
web/tests/pairwise-selection.test.ts |
Tests pairwise selection |
web/tests/moddotplot-config.test.ts |
Tests CLI configuration export |
web/tests/imported-track.test.ts |
Tests annotation tracks |
web/tests/heatmap.test.ts |
Tests heatmap behavior |
web/tests/format.test.ts |
Tests value formatting |
web/tests/feature-track.test.ts |
Tests feature-track geometry |
web/tests/export-controller.test.ts |
Tests export format selection |
web/tests/exact-mode.test.ts |
Tests exact-mode state |
web/tests/detail.test.ts |
Tests detail selection |
web/tests/composite-export.test.ts |
Tests vector exports |
web/tests/colorbrewer.test.ts |
Tests ColorBrewer data |
web/tests/cache.test.ts |
Tests cache eviction |
web/tests/bgzf.test.ts |
Tests BGZF streaming |
web/tests/axes.test.ts |
Tests axis tick selection |
web/src/zip.ts |
Implements ZIP archives |
web/src/worker-jobs.ts |
Manages worker job ownership |
web/src/viewport.ts |
Implements navigation transforms |
web/src/tile.ts |
Implements tile transposition |
web/src/tile-scheduler.ts |
Schedules tile refinement |
web/src/sharding.ts |
Bounds ingestion work |
web/src/sequence-metadata.ts |
Builds sequence presentation metadata |
web/src/resource-plan.ts |
Defines resource budgets |
web/src/refinement.ts |
Prioritizes detailed tiles |
web/src/protocol.ts |
Defines worker messages |
web/src/plot-mode.ts |
Plans plot modes |
web/src/pairwise-selection.ts |
Normalizes pairwise selections |
web/src/format.ts |
Formats genomic values |
web/src/exact-mode.ts |
Defines exact-mode behavior |
web/src/env.d.ts |
Declares build globals |
web/src/detail.ts |
Selects detail resolution |
web/src/cache.ts |
Selects eviction candidates |
web/public/favicon.svg |
Adds application favicon |
web/public/examples/Col-CEN_v1.2.fasta.fai |
Adds example FASTA index |
web/playwright.config.ts |
Configures browser testing |
web/package.json |
Defines web release tooling |
web/e2e/v090-hover-labels.spec.ts |
Tests hover labels |
scripts/prepare-example-assets.mjs |
Prepares verified example data |
scripts/package-release.sh |
Packages release artifacts |
scripts/generate-sbom.mjs |
Generates SBOM and notices |
scripts/generate-current-parameters.mjs |
Generates parameter documentation |
scripts/current-documentation-contract.mjs |
Validates documentation contracts |
scripts/check-reproducible-build.sh |
Checks deterministic builds |
scripts/check-docs.mjs |
Validates documentation |
scripts/audit-default-symbols.sh |
Audits production symbols |
rustfmt.toml |
Configures Rust formatting |
rust-toolchain.toml |
Pins the Rust toolchain |
README.md |
Documents the application |
LICENSE |
Applies MIT-0 licensing |
docs/releases/v0.5.0/scientific-grid.tsv |
Records scientific validation |
docs/releases/v0.2.0-beta.1/browser-performance.json |
Records browser performance |
docs/RELEASE_CHECKLIST.md |
Tracks release gates |
docs/PRIVACY.md |
Documents local data handling |
docs/CITATIONS.md |
Documents citations and credits |
docs/benchmarks/phase0-chm13-chr1-hor.tsv |
Records phase-zero benchmarks |
docs/benchmarks/backend-wasm-chm13.tsv |
Records Wasm benchmarks |
docs/benchmarks/backend-chm13-chr1-hor.tsv |
Records backend comparisons |
docs/benchmarks/backend-adaptive-smoke.tsv |
Records adaptive smoke results |
docs/benchmarks/backend-adaptive-chm13-mixed-1m.tsv |
Records mixed-input results |
docs/benchmarks/backend-adaptive-chm13-hor.tsv |
Records HOR results |
docs/benchmarks/backend-adaptive-chm13-full-native.tsv |
Records full native performance |
docs/benchmarks/backend-adaptive-chm13-dense-1m.tsv |
Records 1024-register results |
docs/benchmarks/backend-adaptive-chm13-dense-1m-r4096.tsv |
Records 4096-register results |
docs/benchmarks/backend-adaptive-chm13-dense-1m-r2048.tsv |
Records 2048-register results |
D3_SCALE_CHROMATIC_LICENSE.txt |
Includes Viridis licensing |
crates/wasm/src/session.rs |
Defines comparison context |
crates/wasm/src/resource.rs |
Enforces Wasm budgets |
crates/wasm/src/preparation.rs |
Manages progressive preparation |
crates/wasm/src/composition.rs |
Manages composition indexes |
crates/wasm/src/cache.rs |
Defines axis-cache identity |
crates/wasm/LICENSE |
Applies crate licensing |
crates/wasm/Cargo.toml |
Configures Wasm crate |
crates/core/tests/statistical_accuracy.rs |
Tests statistical accuracy |
crates/core/src/validation/sparse.rs |
Validates sparse correction |
crates/core/src/validation/projection.rs |
Retains validation projections |
crates/core/src/validation/mod.rs |
Exposes validation APIs |
crates/core/src/validation/estimators.rs |
Implements validation estimators |
crates/core/src/validation/adaptive.rs |
Defines adaptive policy |
crates/core/src/reference.rs |
Implements exact reference calculations |
crates/core/src/matrix/ordinary.rs |
Validates ordinary tiles |
crates/core/src/matrix/frozen.rs |
Validates frozen-axis joins |
crates/core/src/matrix/axis.rs |
Validates axis requests |
crates/core/src/lib.rs |
Exposes scientific APIs |
crates/core/src/containment.rs |
Estimates containment and direction |
crates/core/LICENSE |
Applies core crate licensing |
crates/core/Cargo.toml |
Configures core crate |
Cargo.toml |
Defines Rust workspace |
.node-version |
Pins Node.js |
.gitignore |
Excludes generated artifacts |
.github/workflows/pages.yml |
Deploys GitHub Pages |
.github/workflows/ci.yml |
Runs release CI |
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ModDotPlot Browser v1.0.0
The first stable release of ModDotPlot Browser provides an interactive, browser-based WebAssembly implementation of ModDotPlot.
Highlights: