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Pharmacophore generator - #100

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CRingroseCCDC merged 3 commits into
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pharmacophore_generator
Oct 15, 2026
Merged

CRingroseCCDC merged 3 commits into
mainfrom
pharmacophore_generator

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@CRingroseCCDC

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Adding the Virtual Workshop code for SMILES to Docking Pipeline.

…Contains simple functions chained together to allow users to generate docked ligands from SMILES inputs via the conformer generator. Intermediate step of overlaying ligands for visual comparison is included.
Comment thread scripts/discovery/smiles_to_docking_pipeline/ReadMe.md
Comment thread scripts/discovery/smiles_to_docking_pipeline/ReadMe.md
Comment thread scripts/discovery/smiles_to_docking_pipeline/ReadMe.md
Comment thread scripts/discovery/smiles_to_docking_pipeline/ReadMe.md
Comment thread scripts/discovery/smiles_to_docking_pipeline/ReadMe.md
Comment thread scripts/discovery/smiles_to_docking_pipeline/ReadMe.md
Comment thread scripts/discovery/smiles_to_docking_pipeline/ReadMe.md
Comment thread scripts/discovery/smiles_to_docking_pipeline/ReadMe.md
Comment thread scripts/discovery/smiles_to_docking_pipeline/ReadMe.md
@sonarqubecloud

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@Alex-AMC

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@CRingroseCCDC Please update the table of content for the script in https://github.com/ccdc-opensource/csd-python-api-scripts/tree/main/scripts :)

settings = docker.settings

settings.add_protein_file(protein_file)
settings.add_ligand_file(ligand_file)

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This will generate just one solution for the ligand, is it ok?

@CRingroseCCDC
CRingroseCCDC merged commit 85ebe33 into main Oct 15, 2026
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@CRingroseCCDC
CRingroseCCDC deleted the pharmacophore_generator branch October 15, 2026 12:14
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3 participants