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  1. staphscope-typing-tool staphscope-typing-tool Public

    StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCmec analysis, antimicrobial resistance detection, virulence factor…

    Python 26

  2. EcoliTyper EcoliTyper Public

    EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for clinical microbiology, outbreak investigations, and genomic res…

    C 13

  3. acinetoscope acinetoscope Public

    AcinetoScope: A Unified Pipeline for Comprehensive Acinobacter baumannii & Species Complex Genotyping & Epidemiology

    Python 10

  4. pseudoscope pseudoscope Public

    PseudoScope is a species‑optimized, fully local computational pipeline for comprehensive genomic typing and surveillance of Pseudomonas aeruginosa. It integrates FASTA QC, MLST (Oxford scheme), PAS…

    Python 6

  5. Kleboscope Kleboscope Public

    Kleboscope is A gene‑centric, species‑optimized computational pipeline for comprehensive Klebsiella pneumoniae genomic surveillance

    Python 3

  6. EnteroMark EnteroMark Public

    3