Epidemiological metrics for netdiffuseR - #79

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aoliveram wants to merge 42 commits into

issue-78-epidemiological-metrics

Commits on Dec 10, 2025

adding stochastic transmission mode to expure and rdiffnet
aoliveram
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6f1b036
Fix stochastic exposure normalization (E<=1), improve docs, bump version to 1.25.0, and fix exposure rownames issue
aoliveram
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3e2f1f3

Commits on Dec 27, 2025

Switch stochastic exposure to Bernoulli-to-binary logic with degree normalization
aoliveram
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df7054a
Switch stochastic exposure to Bernoulli-to-binary logic with degree normalization
aoliveram
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c4a03f1

Commits on Apr 7, 2026

Commits on Apr 8, 2026

chore: add t1 to edgelist format and clean up comments
aoliveram
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6bec689

Commits on Apr 14, 2026

Commits on Apr 16, 2026

Commits on Apr 17, 2026

Commits on Apr 18, 2026

rename get_transmissions() -> transmission_tree() (M1 follow-up, #78)

aoliveram
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claude
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a8088c8
feat(exposure): pluggable link_fun kernel (M2, #78)

aoliveram
and
claude
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a2cd639
test(exposure): continuous-weight stochastic tests + warn on out-of-range weights (M3, #78)

aoliveram
and
claude
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ebed4bd
refactor(exposure): user link_fun is single-arg only (M2 follow-up, #78)

aoliveram
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claude
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c4ae665

Commits on Apr 20, 2026

feat: logit adoption model (M4)
aoliveram
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c6d84e9

Commits on Apr 22, 2026

rename(rdiffnet): adoption_model values threshold/logit -> deterministic/stochastic (M4 follow-up, #78)
aoliveram
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cd3cc8d

Commits on Apr 28, 2026

refactor(rdiffnet): adoption_mechanism callback (M6, #78), replacing M4 -adoption_model = c('deterministic', 'stochastics'). Bumps version 1.25.0 -> 1.26.0
aoliveram
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2087ef8

Commits on Apr 29, 2026

feat(rdiffnet) M6: disadoption-mechanism factories + adoption error fix (M6 follow-up, #78)
aoliveram
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2ed6533

Commits on May 6, 2026

Commits on May 12, 2026

Commits on May 13, 2026

Commits on Jul 3, 2026