Hi team,
I encountered two issues with the HG38 annotation bundle linked in the EVscope installation instructions.
HG38_all7_metagene_noOverlap.saf.tgz appears to be corrupted/truncated. I downloaded the Zenodo archive independently and tested the individual .tgz files. All others pass gzip -t, but this one fails with:
gzip: HG38_all7_metagene_noOverlap.saf.tgz: unexpected end of file
The same file also fails to extract with tar due to unexpected EOF. This file is required by the provided EVscope.conf for Step 18.
The installation instructions say to extract EVscope_annotations_HG38.zip into references/annotations_HG38/, but the files inside are themselves distributed as .tgz archives. The provided EVscope.conf points to the uncompressed files directly, so the inner .tgz archives also need to be unpacked. It would help to make this step explicit in the installation instructions.
Could you please check the corrupted SAF archive and clarify the intended extraction procedure for the annotation bundle?
Thank you.
Hi team,
I encountered two issues with the HG38 annotation bundle linked in the EVscope installation instructions.
HG38_all7_metagene_noOverlap.saf.tgz appears to be corrupted/truncated. I downloaded the Zenodo archive independently and tested the individual .tgz files. All others pass gzip -t, but this one fails with:
gzip: HG38_all7_metagene_noOverlap.saf.tgz: unexpected end of file
The same file also fails to extract with tar due to unexpected EOF. This file is required by the provided EVscope.conf for Step 18.
The installation instructions say to extract EVscope_annotations_HG38.zip into references/annotations_HG38/, but the files inside are themselves distributed as .tgz archives. The provided EVscope.conf points to the uncompressed files directly, so the inner .tgz archives also need to be unpacked. It would help to make this step explicit in the installation instructions.
Could you please check the corrupted SAF archive and clarify the intended extraction procedure for the annotation bundle?
Thank you.