[PaulRegular]

Users can now inspect fitted models and retain explicitly calculated OSA residuals without navigating fit internals or refitting. This branch builds on the smooth warm-start CI repair in #18.

Changes:

• Print concise input-validation summaries, with quiet internal calls; install dashboard R dependencies normally and check for Pandoc before rendering.
• Select any of RTMB's five OSA algorithms with method, and retain method/settings/coverage using add_osa_residuals(). residuals() remains a pure table extractor; explicit controls recalculate catch and index together on temporary objectives.
• Offer Auto / Standardized / OSA in public residual plots and dashboards. Auto selects separately by model/panel, preserves partial gaps, and keeps models without OSAs visible. Rendering never calculates OSAs implicitly.
• Add get_ssb(), get_recruitment(), get_fbar(), get_mbar(), get_f() and get_m(), preserving uncertainty, units, projection flags and comparison labels.
• Add plot_model(), a Model structure dashboard page and contrasting website examples linking stored settings to maintained equations.

Validation on final commit 0cb9a21:

• Full suite: 4,540 assertions passed; zero failures, warnings or skips.
• Local R CMD check --no-manual: Status OK.
• GitHub: all five package-check platforms and coverage pass. Overall coverage 94.03%.
• Fresh private-library installation and dashboard rendering passed with only the declared runtime dependency closure; no pkgload/testthat visible and no shared-library changes.
• Mixed-model and two-fleet dashboards were rendered and exercised in the browser, including residual controls, model frames, partial OSAs and reference messages.
• Home/reference/article documentation built; all 239 checked local links/anchors passed.

Limitations remain visible: some CI configurations retain the existing Rd Usage-line-width NOTE. The unchanged SAM-style teaching example reports false convergence, and a small requested OSA subset in the maintained random-walk example was unavailable; warnings and missing values were retained without tuning or algorithm switching.

Fitting specifications and controls are unchanged. No assessment exports were refreshed, version incremented or branches merged.

[chatgpt-codex-connector]

Codex Review Summary

This comment shows the latest Codex review activity on this pull request.

Review	Status	Commit	Review trigger
📝 Code Review	✅ Completed 2026-11-04T04:57:18.937268Z	0cb9a21	Draft marked ready

ℹ️ About Codex in GitHub

Your team has set up Codex to review pull requests in this repo. Reviews are triggered when you

• Open a pull request for review
• Mark a draft as ready
• Comment "@codex review" or "@codex security review".

Codex reacts with 👀 while any review is running, comments if it has suggestions, and reacts with 👍 once all reviews finish with no findings.