v0.0.14 - Improvements in the download using Globus

What's Changed

• feat(globus): parallel HTTPS download and checksum TSV parsing by @Shen-YuFei in #90
• Dev by @ypriverol in #91

New Contributors

• @Shen-YuFei made their first contribution in #90

Full Changelog: v0.0.13...v0.0.14

v0.0.13 - better checksum and retry mechanism

What's Changed

• Update README with corrected CLI commands and formatting by @ypriverol in #83
• Support comma-separated multiple categories in download-all-public-category-files by @jonasscheid in #85
• Add resilient multi-protocol download with fallback and checksum validation by @ypriverol in #87
• Harden downloads and migrate packaging/docs to uv by @chakrabandla in #86
• changes to have a mechanism of retry if corrupted/empty files are present by @ypriverol in #88
• Remove conda recipe packaging workflow by @ypriverol in #89

New Contributors

• @jonasscheid made their first contribution in #85

Full Changelog: v0.0.12...v0.0.13

v0.0.12

What's Changed

• Remove plotting capabilities of pridepy because they are not exposed on the commandline and not needed by @ypriverol in #80
• Remove plotting capabilities by @ypriverol in #81

Full Changelog: v0.0.11...v0.0.12

v0.0.11

Upgrade Aspera RSA key

What's Changed

• Fix Aspera key filename to match actual key file by @ab604 in #72
• Convert skip_if_downloaded_already to a boolean flag by @Copilot in #73
• Standardize CLI flags to use hyphens instead of underscores by @Copilot in #75
• Convert --skip-if-downloaded-already to single flag format by @Copilot in #76
• improve skip options by @ypriverol in #74

New Contributors

• @Copilot made their first contribution in #73

Full Changelog: v0.0.10...v0.0.11

v0.0.10

What's Changed

• Update Python version requirement to >=3.9 by @ab604 in #69
• update dev by @ypriverol in #70
• version bump 0.0.9 -> 0.0.10 by @ypriverol in #71

New Contributors

• @ab604 made their first contribution in #69

Full Changelog: v0.0.9...v0.0.10

v0.0.9 - ProteomeXchange downloads added

What's Changed

• small changes in the manuscript by @ypriverol in #65
• JOSS citation added. by @ypriverol in #66
• ProteomeXchange support by @ypriverol in #67
• add to README by @ypriverol in #68

Full Changelog: v0.0.8...v0.0.9

v0.0.8

What's Changed

• Update DOIs by @ypriverol in #63
• update Docs and manuscript by @ypriverol in #64

Full Changelog: v0.0.7...v0.0.8

v0.0.7

What's Changed

• Dev by @ypriverol in #50
• Dev by @ypriverol in #51
• Update setup.py by @ypriverol in #52
• Dev by @ypriverol in #53
• fix: v3 to v2 for private api by @selvaebi in #54
• fix: removed dataegap and test searchby keyword by @selvaebi in #56
• refactor tests by @ypriverol in #57
• move from setuptools setup.py -> project.toml by @ypriverol in #58
• major refactoring by @ypriverol in #59
• Search by key word by @selvaebi in #60
• move to poetry by @ypriverol in #61
• last version of the manuscript by @ypriverol in #62

Full Changelog: v0.0.6...v0.0.7

v0.0.6

What's Changed

• Fix for issue #46 by @selvaebi in #48
• Update author list. by @ypriverol in #49

Full Changelog: v0.0.5...v0.0.6

v0.0.5

What's Changed

• Dev by @ypriverol in #41
• Dev by @ypriverol in #42
• Dev by @ypriverol in #43
• Stream apis by @chakrabandla in #44
• fix the conda build. by @ypriverol in #45

New Contributors

• @chakrabandla made their first contribution in #44

Full Changelog: v0.0.4...v0.0.5