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  1. CyteArc CyteArc Public

    Fast, out-of-core single-cell analysis in Python for RNA, ATAC, protein, and multi-omic data, scaling to 100M+ cells. Mount remote datasets, work within a memory budget, and trace every result thro…

    Python 9 2

  2. CyteBase CyteBase Public

    Python 1

  3. CyteType CyteType Public

    Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

    Python 139 15

  4. CyteTypeR CyteTypeR Public

    Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

    R 41 2

  5. CyteOnto CyteOnto Public

    Automated semantic comparison of cell type annotations

    Python 7 2

Repositories

Showing 9 of 9 repositories
  • CyteArc Public

    Fast, out-of-core single-cell analysis in Python for RNA, ATAC, protein, and multi-omic data, scaling to 100M+ cells. Mount remote datasets, work within a memory budget, and trace every result through built-in provenance.

    NygenAnalytics/CyteArc's past year of commit activity
    Python 9 BSD-3-Clause 2 5 10 Updated Oct 29, 2026
  • CytePool Public

    Test which genes, cell types and pathways change between conditions in single-cell and bulk omics data.

    NygenAnalytics/CytePool's past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated Oct 29, 2026
  • CyteOnto Public

    Automated semantic comparison of cell type annotations

    NygenAnalytics/CyteOnto's past year of commit activity
    Python 7 MIT 2 2 0 Updated Oct 29, 2026
  • CyteType Public

    Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

    NygenAnalytics/CyteType's past year of commit activity
    Python 139 BSD-3-Clause 15 4 0 Updated Oct 29, 2026
  • CyteBase Public
    NygenAnalytics/CyteBase's past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Oct 29, 2026
  • .github Public

    Public info on Nygen's Github account

    NygenAnalytics/.github's past year of commit activity
    0 0 0 0 Updated Oct 26, 2026
  • scarf Public

    Memory-efficient analysis of single-cell data.

    NygenAnalytics/scarf's past year of commit activity
    Python 125 BSD-3-Clause 18 0 0 Updated Oct 21, 2026
  • CyteTypeR Public

    Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

    NygenAnalytics/CyteTypeR's past year of commit activity
    R 41 2 3 0 Updated Oct 18, 2026
  • CyteType_manuscript Public

    Scripts and notebooks for the CyteType manuscript

    NygenAnalytics/CyteType_manuscript's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 24, 2025