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KazeemHamzat
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Feature-IOPS-3028-WGS-Test-Order-Form-Cancer-HeamOnc
Feb 13, 2025
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30b7ad8
Create Cancer-HaemOnc Test Option
KazeemHamzat 7821580
Update ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example.json
KazeemHamzat 5b1435c
Update ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example.json
KazeemHamzat 6c6ac7c
Feedback Issues
KazeemHamzat 6be8b42
Update ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example.json
KazeemHamzat c0e922a
Update Specimen-PatrickSammyBoneMarrowAspiration-Example.json
KazeemHamzat 9026aff
Update Specimen.condition values
KazeemHamzat 89b54bb
Feedback Issues
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,38 @@ | ||
| { | ||
| "resourceType": "Condition", | ||
| "id": "Condition-AcuteMyeloidLeukaemia-Example", | ||
| "clinicalStatus": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://terminology.hl7.org/CodeSystem/condition-clinical", | ||
| "code": "active", | ||
| "display": "Active" | ||
| } | ||
| ] | ||
| }, | ||
| "verificationStatus": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://terminology.hl7.org/CodeSystem/condition-ver-status", | ||
| "code": "provisional", | ||
| "display": "Provisional" | ||
| } | ||
| ] | ||
| }, | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://snomed.info/sct", | ||
| "code": "1162928000", | ||
| "display": "Acute myeloid leukemia (morphologic abnormality)" | ||
| } | ||
| ] | ||
| }, | ||
| "subject": { | ||
| "identifier": { | ||
| "system": "https://fhir.nhs.uk/Id/nhs-number", | ||
| "value": "9449307873" | ||
| } | ||
| }, | ||
| "recordedDate": "2023-09-05" | ||
| } |
40 changes: 40 additions & 0 deletions
40
Observation/Observation-BlastPercentageWGSSample-Example.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,40 @@ | ||
| { | ||
| "resourceType": "Observation", | ||
| "id": "Observation-BlastPercentageWGSSample-Example", | ||
| "status": "final", | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://snomed.info/sct", | ||
| "code": "1015521000000107", | ||
| "display": "Percentage blast cells (observable entity)" | ||
| } | ||
| ] | ||
| }, | ||
| "subject": { | ||
| "reference": "Patient/Patient-PatrickSammy-Example", | ||
| "identifier": { | ||
| "system": "https://fhir.nhs.uk/Id/nhs-number", | ||
| "value": "9449307873" | ||
| } | ||
| }, | ||
| "specimen": { | ||
| "identifier": { | ||
| "system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24", | ||
| "value": "RR81235", | ||
| "assigner": { | ||
| "identifier": { | ||
| "system": "https://fhir.nhs.uk/Id/ods-organization-code", | ||
| "value": "696B0" | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "valueQuantity": { | ||
| "value": 25, | ||
| "unit": "%", | ||
| "system": "http://unitsofmeasure.org", | ||
| "code": "%" | ||
| }, | ||
| "effectiveDateTime": "2023-08-05" | ||
| } |
40 changes: 40 additions & 0 deletions
40
Observation/Observation-NucleatedCellCountWGSSample-Example.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,40 @@ | ||
| { | ||
| "resourceType": "Observation", | ||
| "id": "Observation-NucleatedCellCount-Example", | ||
| "status": "final", | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://snomed.info/sct", | ||
| "code": "1022461000000100", | ||
| "display": "Nucleated red blood cell count" | ||
| } | ||
| ] | ||
| }, | ||
| "subject": { | ||
| "reference": "Patient/Patient-PatrickSammy-Example", | ||
| "identifier": { | ||
| "system": "https://fhir.nhs.uk/Id/nhs-number", | ||
| "value": "9449307873" | ||
| } | ||
| }, | ||
| "specimen": { | ||
| "identifier": { | ||
| "system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24", | ||
| "value": "RR81235", | ||
| "assigner": { | ||
| "identifier": { | ||
| "system": "https://fhir.nhs.uk/Id/ods-organization-code", | ||
| "value": "696B0" | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "valueQuantity": { | ||
| "value": 10, | ||
| "unit": "10^12/l", | ||
| "system": "http://unitsofmeasure.org", | ||
| "code": "10^12/L" | ||
| }, | ||
| "effectiveDateTime": "2023-09-05" | ||
| } |
31 changes: 31 additions & 0 deletions
31
Observation/Observation-PatrickSammyNoBoneMarrowTransplant-Example.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,31 @@ | ||
| { | ||
| "resourceType": "Observation", | ||
| "id": "Observation-PatrickSammyNoBoneMarrowTransplant-Example", | ||
| "status": "final", | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://snomed.info/sct", | ||
| "code": "416128008", | ||
| "display": "No history of procedure (situation)" | ||
| } | ||
| ] | ||
| }, | ||
| "valueCodeableConcept": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://snomed.info/sct", | ||
| "code": "445715009", | ||
| "display": "Blood and marrow transplantation (qualifier value)" | ||
| } | ||
| ] | ||
| }, | ||
| "subject": { | ||
| "reference": "Patient/Patient-PatrickSammy-Example", | ||
| "identifier": { | ||
| "system": "https://fhir.nhs.uk/Id/nhs-number", | ||
| "value": "9449307873" | ||
| } | ||
| }, | ||
| "effectiveDateTime": "2023-09-05" | ||
| } |
106 changes: 106 additions & 0 deletions
106
ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,106 @@ | ||
| { | ||
| "resourceType": "ServiceRequest", | ||
| "id": "ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example", | ||
| "extension": [ | ||
| { | ||
| "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage", | ||
| "valueCodeableConcept": { | ||
| "coding": [ | ||
| { | ||
| "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory", | ||
| "code": "nhs-england", | ||
| "display": "NHS England" | ||
| } | ||
| ] | ||
| } | ||
| }, | ||
| { | ||
| "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-AdditionalContact", | ||
| "valueReference": { | ||
| "reference": "PractitionerRole/PractitionerRole-AnnaLaneKingstonPathology-Example" | ||
| } | ||
| } | ||
| ], | ||
| "status": "active", | ||
| "intent": "order", | ||
| "category": [ | ||
| { | ||
| "coding": [ | ||
| { | ||
| "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory", | ||
| "code": "cancer-wgs", | ||
| "display": "Cancer - WGS" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "coding": [ | ||
| { | ||
| "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", | ||
| "code": "diagnostic", | ||
| "display": "Diagnostic" | ||
| } | ||
| ] | ||
| } | ||
| ], | ||
| "priority": "routine", | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory", | ||
| "code": "M89.108", | ||
| "display": "Multi Target NGS Panel Small Variant" | ||
| } | ||
| ] | ||
| }, | ||
| "subject": { | ||
| "reference": "Patient/Patient-DemeizaSeo-Example", | ||
| "identifier": { | ||
| "system": "https://fhir.nhs.uk/Id/nhs-number", | ||
| "value": "9449306559" | ||
| } | ||
| }, | ||
| "authoredOn": "2023-09-08", | ||
| "requester": { | ||
| "reference": "PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example" | ||
| }, | ||
| "performer": [ | ||
| { | ||
| "identifier": { | ||
| "system": "https://fhir.nhs.uk/Id/ods-organization-code", | ||
| "value": "RJZ" | ||
| }, | ||
| "display": "KING'S COLLEGE HOSPITAL NHS FOUNDATION TRUST" | ||
| } | ||
| ], | ||
| "supportingInfo": [ | ||
| { | ||
| "reference": "Condition/Condition-AcuteMyeloidLeukaemia-Example" | ||
| }, | ||
| { | ||
| "reference": "Observation/Observation-BlastPercentage-Example" | ||
| }, | ||
| { | ||
| "reference": "Observation/Observation-NucleatedCellCount-Example" | ||
| }, | ||
| { | ||
| "reference": "Observation/Observation-PatrickSammyNoBoneMarrowTransplant-Example" | ||
| }, | ||
| { | ||
| "reference": "Consent/Consent-RoDToFollow-Example" | ||
| } | ||
| ], | ||
| "specimen": [ | ||
| { | ||
| "reference": "Specimen/Specimen-PatrickSammyBoneMarrowAspiration-Example" | ||
| } | ||
| ], | ||
| "note": [ | ||
| { | ||
| "text": "Relevant Family History" | ||
| }, | ||
| { | ||
| "text": "Other Additional Information" | ||
| } | ||
| ] | ||
| } |
111 changes: 111 additions & 0 deletions
111
ServiceRequest/ServiceRequest-WGSTestOrderForm-GermlineLate-Example.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,111 @@ | ||
| { | ||
| "resourceType": "ServiceRequest", | ||
| "id": "ServiceRequest-WGSTestOrderForm-GermlineLate-Example", | ||
| "basedOn": [ | ||
| { | ||
| "reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example" | ||
| } | ||
| ], | ||
| "extension": [ | ||
| { | ||
| "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage", | ||
| "valueCodeableConcept": { | ||
| "coding": [ | ||
| { | ||
| "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory", | ||
| "code": "nhs-england", | ||
| "display": "NHS England" | ||
| } | ||
| ] | ||
| } | ||
| }, | ||
| { | ||
| "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-AdditionalContact", | ||
| "valueReference": { | ||
| "reference": "PractitionerRole/PractitionerRole-AnnaLaneKingstonPathology-Example" | ||
| } | ||
| } | ||
| ], | ||
| "status": "active", | ||
| "intent": "order", | ||
| "category": [ | ||
| { | ||
| "coding": [ | ||
| { | ||
| "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory", | ||
| "code": "cancer-wgs", | ||
| "display": "Cancer - WGS" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "coding": [ | ||
| { | ||
| "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", | ||
| "code": "diagnostic", | ||
| "display": "Diagnostic" | ||
| } | ||
| ] | ||
| } | ||
| ], | ||
| "priority": "routine", | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory", | ||
| "code": "M89.108", | ||
|
KazeemHamzat marked this conversation as resolved.
Outdated
|
||
| "display": "Multi Target NGS Panel Small Variant" | ||
| } | ||
| ] | ||
| }, | ||
| "subject": { | ||
| "reference": "Patient/Patient-DemeizaSeo-Example", | ||
| "identifier": { | ||
| "system": "https://fhir.nhs.uk/Id/nhs-number", | ||
| "value": "9449306559" | ||
| } | ||
| }, | ||
| "authoredOn": "2023-09-08", | ||
| "requester": { | ||
| "reference": "PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example" | ||
| }, | ||
| "performer": [ | ||
| { | ||
| "identifier": { | ||
| "system": "https://fhir.nhs.uk/Id/ods-organization-code", | ||
| "value": "RJZ" | ||
| }, | ||
| "display": "KING'S COLLEGE HOSPITAL NHS FOUNDATION TRUST" | ||
| } | ||
| ], | ||
| "supportingInfo": [ | ||
| { | ||
|
KazeemHamzat marked this conversation as resolved.
Outdated
|
||
| "reference": "Condition/Condition-AcuteMyeloidLeukaemia-Example" | ||
| }, | ||
| { | ||
| "reference": "Observation/Observation-BlastPercentage-Example" | ||
| }, | ||
| { | ||
| "reference": "Observation/Observation-NucleatedCellCount-Example" | ||
| }, | ||
| { | ||
| "reference": "Observation/Observation-PatrickSammyNoBoneMarrowTransplant-Example" | ||
| }, | ||
| { | ||
| "reference": "Consent/Consent-RoDToFollow-Example" | ||
| } | ||
| ], | ||
| "specimen": [ | ||
| { | ||
| "reference": "Specimen/Specimen-PatrickSammyBloodEDTA-Example" | ||
| } | ||
| ], | ||
| "note": [ | ||
| { | ||
| "text": "Relevant Family History" | ||
| }, | ||
| { | ||
| "text": "Other Additional Information" | ||
| } | ||
| ] | ||
| } | ||
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