Issues

• Print citations as numbers: [@key] as [n], @key as "Author [n]"

  ai-authoredmodel:claude-sonnet-5-5
  Morrison-Lab/rme#1377 · Filter by author d-morrison opened on Oct 18, 2026
  

• Keep only the definition in each #def- div

  ai-authoredmodel:claude-sonnet-5-5
  Morrison-Lab/rme#1293 · Filter by author dem-extra1 opened on Oct 14, 2026

• add a chapter on introduction to analysis of incomplete data

  Morrison-Lab/rme#1291 · Filter by author d-morrison opened on Oct 13, 2026

• add a chapter on introduction to spatial statistics

  Morrison-Lab/rme#1290 · Filter by author d-morrison opened on Oct 13, 2026

• the concept map should include links from this repo to the prerequisite repos, and from the linked divs in those repos to other divs in those repos and their prereq repos, recursively

  Morrison-Lab/rme#1274 · Filter by author d-morrison opened on Oct 13, 2026

• what content should we outsource to sds/pds/mds ?

  Morrison-Lab/rme#1227 · Filter by author d-morrison opened on Oct 5, 2026

• Expand notational shorthands to full forms (52 candidates)

  ai-authored
  Morrison-Lab/rme#1226 · Filter by author dem-extra1 opened on Oct 5, 2026
  1

• summarize reinforcement learning in biostatistics

  Morrison-Lab/rme#1222 · Filter by author d-morrison opened on Oct 2, 2026

• Repoint links to sections that moved within sds and pds

  Morrison-Lab/rme#1208 · Filter by author dem-extra1 opened on Sep 28, 2026

• Retire rme's prerequisite appendices in favor of the mds/pds/sds repos

  ai-authored
  Morrison-Lab/rme#1204 · Filter by author dem-extra1 opened on Sep 28, 2026
  1

• Remove probability-chapter content now duplicated in pds, keep hazard-function and homoskedasticity

  ai-authoredmodel:claude-sonnet-5
  Morrison-Lab/rme#1203 · Filter by author d-morrison opened on Sep 27, 2026
  1

• PR CI renders only the website profile, so LaTeX-only breakage lands on main before anything catches it

  ai-authoredmodel:claude-opus-5
  Morrison-Lab/rme#1160 · Filter by author d-morrison opened on Sep 9, 2026

• Jules bot pushes revert already-merged work on #1138, twice, with scoped-sounding commit subjects

  Morrison-Lab/rme#1158 · Filter by author d-morrison opened on Sep 9, 2026

• Step-annotation columns overflow the PDF text block, clipping justifications off the page

  Morrison-Lab/rme#1154 · Filter by author d-morrison opened on Sep 8, 2026
  2

• PDF/LaTeX render only runs post-merge, so a PR can break publish.yml with every check green

  Morrison-Lab/rme#1152 · Filter by author d-morrison opened on Sep 8, 2026
  2

• Restore build / build to the main ruleset, once the bypass path is observed reporting it

  Morrison-Lab/rme#1145 · Filter by author d-morrison opened on Sep 7, 2026

• Triage 13 commits on local branches that exist on no remote

  Morrison-Lab/rme#1123 · Filter by author d-morrison opened on Aug 27, 2026
  1

• add section on concordance metrics

  Morrison-Lab/rme#1117 · Filter by author d-morrison opened on Aug 25, 2026

• ASCII-punctuation sweep (312 lines, 92 files) so check-non-standard-chars can be adopted

  Morrison-Lab/rme#1104 · Filter by author d-morrison opened on Aug 24, 2026

• Backfill bibliography DOIs so check-bibliography-dois can be adopted (116 of 167 entries have none)

  Morrison-Lab/rme#1103 · Filter by author d-morrison opened on Aug 24, 2026

• 80 broken links in the book, and no link check to catch them

  Morrison-Lab/rme#1102 · Filter by author d-morrison opened on Aug 24, 2026

• Five narrative-flow PRs edit the same subfiles; only #1091 is independently mergeable

  Morrison-Lab/rme#1095 · Filter by author dem-extra1 opened on Aug 24, 2026

• Dependency-only PRs can restore a stale Quarto freeze, so their render may not exercise the new versions

  Morrison-Lab/rme#1085 · Filter by author d-morrison opened on Aug 20, 2026

• Handoff: finish the ai-config plugin migration (#1074) and follow up on gha#284

  Morrison-Lab/rme#1077 · Filter by author d-morrison opened on Aug 20, 2026
  7

• don't skip steps

  Morrison-Lab/rme#1071 · Filter by author d-morrison opened on Aug 18, 2026