All pull requests

Pull requests

• fix bug in recreate_sim_state

  #437·rheiland opened Sep 22, 2026Collaborator·

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  3

• use const for param assignment

  #436·rheiland opened Sep 17, 2026Collaborator·

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• Compare neighbor type against diff_type in the interactions sample

  #434·drbergman opened Aug 19, 2026Collaborator·

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  1

• Fix uninitialized loop counter in intialize_hypothesis_rulesets

  #433·drbergman opened Aug 19, 2026Collaborator·

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  1

• warn when a transformation hands an attack to a non-attacking type

  #432·drbergman opened Aug 16, 2026Collaborator·

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  2

• Thread-reproducible simulation: counter-based RNG + race fixes

  #427·heberlr opened Aug 7, 2026Collaborator·

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  4

• Fix uninitialized and leaked libRoadrunner instance handle

  intracellularmore_work_needed
  #425·drbergman opened Aug 7, 2026Collaborator·

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  6

• Give each cell definition its own fixed_duration and death-phase parameters

  #424·drbergman opened Aug 7, 2026Collaborator·

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  9

• Add support for custom SVG cell colors and validation in PhysiCell settings

  #416·drbergman opened May 18, 2026Collaborator·

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  10

• Combining intracellular models with a single model

  work in progress
  #415·vincent-noel opened Mar 31, 2026Collaborator·

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  13

• expose and parse the mechanics grid size in XML

  #413·rheiland opened Feb 21, 2026Collaborator·

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  9

• BioFVM Interface

  #401·asmelko opened Dec 15, 2025·

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  8

• Patch1142 cell defaults functions

  #390·elmbeech opened Sep 30, 2025Contributor·

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  4

• improve substrate csv initial conditions: omit voxels, fix out-of-bounds reads, revive headerless path

  #386·drbergman opened Sep 5, 2025Collaborator·

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  2

• Feature extended asym div

  #385·drbergman opened Sep 5, 2025Collaborator·

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  3

• add current cycle phase index, number of attachments, and number of spring attachments to signals

  #381·drbergman opened Aug 19, 2025Collaborator·

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• delete duplicate elapsed time in phase from saves

  #380·drbergman opened Jul 28, 2025Collaborator·

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• Patch1142 rng warning

  #376·elmbeech opened Jun 13, 2025Contributor·

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  1

• Patch1142 episode cell die

  #375·elmbeech opened Jun 13, 2025Contributor·

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• standardize file copy to output

  #372·drbergman opened Apr 29, 2025Collaborator·

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  8

  

• Rules upgrade and extensions

  #370·drbergman opened Apr 16, 2025Collaborator·

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  7

  

• simplified dc functions

  #369·drbergman opened Apr 1, 2025Collaborator·

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  3

  

• msys2 package list clean out and brew gcc update to v14.

  #359·elmbeech opened Feb 3, 2025Contributor·

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  3

• DC initialization from file

  #357·drbergman opened Feb 2, 2025Collaborator·

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  12

  

• Using default cell definition to get structure size in place of the first cell (which might not exist)

  bug
  #348·vincent-noel opened Jan 10, 2025Collaborator·

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  10