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Merged
jeffreyHoelzel merged 1 commit into from
Mar 26, 2026
Merged

fix/psp-pypi-package #48

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18 changes: 18 additions & 0 deletions MANIFEST.in
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Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
include README.md
include LICENSE
include pyproject.toml

graft src/pepseqpred

prune .github
prune dist
prune envs
prune localdata
prune logs
prune notebooks
prune scripts
prune tests

global-exclude __pycache__/*
global-exclude *.py[cod]
global-exclude *.ipynb
20 changes: 18 additions & 2 deletions pyproject.toml
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Expand Up @@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"

[project]
name = "pepseqpred"
version = "0.1.2"
version = "0.1.3"
description = "Residue-level epitope prediction pipeline for peptide/protein workflows."
readme = "README.md"
requires-python = ">=3.12"
Expand Down Expand Up @@ -78,7 +78,23 @@ pepseqpred-train-ffnn-optuna = "pepseqpred.apps.train_ffnn_optuna_cli:main"

[tool.setuptools]
package-dir = {"" = "src"}
include-package-data = true

[tool.setuptools.packages.find]
where = ["src"]
include = ["pepseqpred*"]
include = [
"pepseqpred",
"pepseqpred.api",
"pepseqpred.core",
"pepseqpred.core.predict",
"pepseqpred.core.embeddings",
"pepseqpred.core.models",
"pepseqpred.core.io"
]
exclude = [
"pepseqpred.apps*",
"pepseqpred.core.train*",
"pepseqpred.core.preprocess*",
"pepseqpred.core.data*",
"pepseqpred.core.labels*"
]
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