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Update hdf5 to 2.1.0 and parallel-netcdf to 1.14.1; require +fix_rt_linkage for intel-oneapi-compilers #2150

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Update hdf5 to 2.1.0 and parallel-netcdf to 1.14.1; require +fix_rt_linkage for intel-oneapi-compilers #2150

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9e7f7cc
Update hdf5 to 2.1.0 and parallel-netcdf to 1.14.1
mathomp4 Oct 5, 2026
84db70a
Remove parallel-netcdf update comments
mathomp4 Oct 5, 2026
9211cb5
Merge branch 'develop' into io/hdf5-2.1.0-pnetcdf-1.14.1
mathomp4 Oct 7, 2026
138d199
Remove util/check_libirc.sh and calls to it from GitHub workflows; fo…
climbfuji Oct 7, 2026
c1d7581
Merge pull request #2 from climbfuji/io/hdf5-2.1.0-pnetcdf-1.14.1
mathomp4 Oct 7, 2026
236ef27
Merge branch 'develop' into io/hdf5-2.1.0-pnetcdf-1.14.1
mathomp4 Oct 7, 2026
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6 changes: 0 additions & 6 deletions .github/workflows/ubuntu-ci-x86_64-oneapi-ifx.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -174,9 +174,6 @@ jobs:
spack install --fail-fast --source --no-check-signature 2>&1 | tee log.install.${ENVNAME}.all
spack buildcache create -u local-binary

# Check for libirc.so in shared libraries (returns 1=error if found)
${SPACK_STACK_DIR}/util/check_libirc.sh

# Remove buildcache config settings
spack config remove config:install_tree:padded_length

Expand Down Expand Up @@ -213,9 +210,6 @@ jobs:
# Check shared libraries
${SPACK_STACK_DIR}/util/ldd_check.py $SPACK_ENV 2>&1 | tee log.ldd_check

# Check for libirc.so in shared libraries (returns 1=error if found)
${SPACK_STACK_DIR}/util/check_libirc.sh

# Create modules
spack clean -a
spack module tcl refresh -y
Expand Down
6 changes: 0 additions & 6 deletions .github/workflows/ubuntu-ci-x86_64-oneapi.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -174,9 +174,6 @@ jobs:
spack install --fail-fast --source --no-check-signature 2>&1 | tee log.install.${ENVNAME}.all
spack buildcache create -u local-binary

# Check for libirc.so in shared libraries (returns 1=error if found)
${SPACK_STACK_DIR}/util/check_libirc.sh

# Remove buildcache config settings
spack config remove config:install_tree:padded_length

Expand Down Expand Up @@ -213,9 +210,6 @@ jobs:
# Check shared libraries
${SPACK_STACK_DIR}/util/ldd_check.py $SPACK_ENV 2>&1 | tee log.ldd_check

# Check for libirc.so in shared libraries (returns 1=error if found)
${SPACK_STACK_DIR}/util/check_libirc.sh

# Create modules
spack clean -a
spack module tcl refresh -y
Expand Down
5 changes: 2 additions & 3 deletions configs/common/packages.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -250,7 +250,7 @@ packages:
- ~netcdf
hdf5:
require:
- '@1.14.5'
- '@2.1.0'
- +hl
- +fortran
- +mpi
Expand Down Expand Up @@ -389,10 +389,9 @@ packages:
require:
- '@2.6.2'
- +pnetcdf
# DH* CAN WE UPDATE? NEED A NEW SHARED-INTEL PATCH?
parallel-netcdf:
require:
- '@1.12.3'
- '@1.14.1'
pflogger:
require:
- +mpi
Expand Down
7 changes: 4 additions & 3 deletions configs/common/packages_oneapi.yaml
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Expand Up @@ -19,6 +19,10 @@ packages:
lapack:
require:
- intel-oneapi-mkl
# Force fixing libirc.so/libimf.so in intel-oneapi-runtime
intel-oneapi-compilers:
require:
- +fix_rt_linkage
# Individual package settings
antlr:
require:
Expand Down Expand Up @@ -63,9 +67,6 @@ packages:
oops:
require:
- +mkl
parallel-netcdf:
require:
- +shared-intel
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patchelf:
require:
- '%c=gcc'
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27 changes: 0 additions & 27 deletions util/check_libirc.sh
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