Issues

• Edit distance txt files have 0 counts for all values

  Integrative-Transcriptomics/DamageProfiler#63 · Filter by author ivelsko opened on Mar 18, 2026

• The reference length should be checked against the length given in the BAM file

  Integrative-Transcriptomics/DamageProfiler#62 · Filter by author terrycojones opened on Dec 18, 2025

• Heap size

  Integrative-Transcriptomics/DamageProfiler#61 · Filter by author sultandromeda opened on May 28, 2024

• How to run in Computing Cluster?

  Integrative-Transcriptomics/DamageProfiler#60 · Filter by author sultandromeda opened on Mar 26, 2024
  2

• Read processing gets cripplingly slow over time

  Integrative-Transcriptomics/DamageProfiler#59 · Filter by author TCLamnidis opened on Aug 9, 2023

• Add an option to subsample the input

  Integrative-Transcriptomics/DamageProfiler#58 · Filter by author TCLamnidis opened on Jan 17, 2023
  1

  

• rescale

  Integrative-Transcriptomics/DamageProfiler#54 · Filter by author atongsa opened on Jul 23, 2021
  1

• OutOfMemoryError: Java heap space

  Integrative-Transcriptomics/DamageProfiler#50 · Filter by author lczech opened on Nov 18, 2020
  6

• Relax reference name validation with ValidationStringency

  Integrative-Transcriptomics/DamageProfiler#39 · Filter by author maxibor opened on Jun 28, 2020
  7

  

• Performance improvements required

  Integrative-Transcriptomics/DamageProfiler#10 · Filter by author apeltzer opened on Nov 21, 2017 · Features for future
  1

  

• Add Tests for publication

  Integrative-Transcriptomics/DamageProfiler#7 · Filter by author apeltzer opened on Nov 21, 2017 · Publication (version 1.0)