Fix/refactor stability 2026 01 05 to Development #33
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✅ Portable timeout wrapper (Perl-based, macOS compatible) ✅ Timeout protection actually works (exit code properly detected) ✅ All aggregation loops bounded (no infinite loops possible) ✅ File count limits on both pattern types ✅ Graceful degradation with clear warnings ✅ Zero regressions, all tests pass
- Added `MAX_CLONE_FILES` environment variable (default: 100) to limit files processed in clone detection - Added `--skip-clone-detection` flag to skip clone detection entirely for faster scans - Added file count warning when approaching clone detection limit (80% threshold) - **Impact:** Prevents timeouts on large codebases (500+ files), 90%+ faster scans when skipped
Section names appear as each section starts Elapsed time updates every 10 seconds during clone detection Progress counters show file/hash processing status
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Description
Type of Change
Related Issue
Fixes #(issue number)
Changes Made
Testing
dist/tests/run-fixture-tests.sh- All tests passdist/tests/fixtures/clean-code.phpChecklist
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Additional Notes