Fix/issue 100 python 314 - #101

Merged

haeussma merged 15 commits into

mainfrom

fix/issue-100-python-314

Jul 23, 2026

Commits on Jul 23, 2026

Remove fastobo dependency and add pytest marker for remote tests in pyproject.toml
haeussma
committed
cff6858
Update GitHub Actions workflows to include Python 3.14 in test matrix
haeussma
committed
0de25cb
Update versioning to use importlib.metadata for dynamic version retrieval
haeussma
committed
a7a1e7a
Add pydantic dependency to pyproject.toml
haeussma
committed
98b11b2
fix(composer): surface real fetcher errors instead of swallowing them
haeussma
committed
b61b817
fix(fetcher): accept integer PubMed IDs from PDB API
haeussma
committed
cbac15b
fix(sbml): flush model.xml before adding it to OMEX archive
haeussma
committed
d26217d
Add unit tests for composer fetcher functionality and mark integration tests as remote
haeussma
committed
eaf7efb
Update expected JSON fixtures to include additional PubMed reference
haeussma
committed
55e6dcd
Bump version to 2.2.3 and update fastobo dependency to 0.14.1 in pyproject.toml and uv.lock
haeussma
committed
c141f53
Update GitHub Actions workflows to use actions/checkout@v7 and actions/setup-python@v7, and upgrade astral-sh/setup-uv to v9.0.0. This ensures consistency across workflows and leverages the latest …
haeussma
committed
e44f88b
Sync uv.lock project version to 2.2.3

haeussma
and
claude
committed
2061d5d
Add pre-commit hooks for uv-lock and ruff

haeussma
and
claude
committed
4a9b34d
Fix pre-commit install instructions to use uv tool install

haeussma
and
claude
committed
01c1e94
Remove remote-tests CI workflow

haeussma
and
claude
committed
03bd2d1

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Fix/issue 100 python 314 - #101

Fix/issue 100 python 314#101
haeussma merged 15 commits into
mainfrom
fix/issue-100-python-314

Commits on Jul 23, 2026

Remove fastobo dependency and add pytest marker for remote tests in pyproject.toml

Update GitHub Actions workflows to include Python 3.14 in test matrix

Update versioning to use importlib.metadata for dynamic version retrieval

Add pydantic dependency to pyproject.toml

fix(composer): surface real fetcher errors instead of swallowing them

fix(fetcher): accept integer PubMed IDs from PDB API

fix(sbml): flush model.xml before adding it to OMEX archive

Add unit tests for composer fetcher functionality and mark integration tests as remote

Update expected JSON fixtures to include additional PubMed reference

Bump version to 2.2.3 and update fastobo dependency to 0.14.1 in pyproject.toml and uv.lock

Update GitHub Actions workflows to use actions/checkout@v7 and actions/setup-python@v7, and upgrade astral-sh/setup-uv to v9.0.0. This ensures consistency across workflows and leverages the latest …

Sync uv.lock project version to 2.2.3

Add pre-commit hooks for uv-lock and ruff

Fix pre-commit install instructions to use uv tool install

Remove remote-tests CI workflow