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Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 161 19

  2. foldtree foldtree Public

    Infers a phylogenetic tree from protein structures

    Jupyter Notebook 112 21

  3. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 102 17

  4. OMArk OMArk Public

    Python 94 7

  5. edgehog edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    Python 39 4

  6. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 36 13

Repositories

Showing 10 of 59 repositories
  • fastoma-bench Public

    Automatic benchmarking of Fastoma over time

    DessimozLab/fastoma-bench's past year of commit activity
    Python 2 0 0 0 Updated Oct 4, 2026
  • HogProf Public

    Phylogenetic profiling with orthology data

    DessimozLab/HogProf's past year of commit activity
    Jupyter Notebook 13 MIT 2 5 0 Updated Oct 2, 2026
  • orthoxml-tools Public

    Tools for working with OrthoXML files.

    DessimozLab/orthoxml-tools's past year of commit activity
    Python 7 GPL-3.0 1 9 0 Updated Oct 2, 2026
  • foldtree2 Public

    foldtree2

    DessimozLab/foldtree2's past year of commit activity
    Jupyter Notebook 14 AGPL-3.0 6 2 0 Updated Oct 2, 2026
  • ESM3di Public

    using ESM2 to translate amino acids to 3di sequences to create foldseek

    DessimozLab/ESM3di's past year of commit activity
    Jupyter Notebook 1 MIT 0 1 0 Updated Sep 29, 2026
  • yeast_fusion_segmenter Public

    retrain yolov8 to segment and label yeast cells with interupted fusion phenotypes

    DessimozLab/yeast_fusion_segmenter's past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Sep 25, 2026
  • pyomabrowser Public

    Django based webserver for omabrowser

    DessimozLab/pyomabrowser's past year of commit activity
    JavaScript 3 CC-BY-4.0 0 0 0 Updated Sep 24, 2026
  • django-matomo-api-tracking Public

    Django Matomo app allowing server side traffic tracking

    DessimozLab/django-matomo-api-tracking's past year of commit activity
    Python 2 1 0 1 Updated Sep 24, 2026
  • pyoma Public

    Python library to interact with OMA hdf5 files

    DessimozLab/pyoma's past year of commit activity
    Python 1 MPL-2.0 0 2 3 Updated Sep 23, 2026
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA's past year of commit activity
    Python 102 MPL-2.0 17 9 5 Updated Sep 23, 2026
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