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@Deep-MI

Deep Medical Imaging Lab (PI Reuter)

Repositories of the Reuter DeepMI Lab

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  1. FastSurfer FastSurfer Public

    PyTorch implementation of FastSurferCNN

    Python 634 156

  2. FatSegNet FatSegNet Public

    Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI

    Python 27 13

  3. fsqc fsqc Public

    A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

    Python 82 18

  4. LaPy LaPy Public

    Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

    Python 105 18

  5. BrainPrint BrainPrint Public

    A python-only derivative of the original BrainPrint scripts

    Python 18 9

  6. olf-bulb-segmentation olf-bulb-segmentation Public

    Automated Olfactory Bulb Segmentation Pipeline for T2-Weighted MRI

    Python 12 2

Repositories

Showing 10 of 24 repositories
  • FastSurfer Public

    PyTorch implementation of FastSurferCNN

    Deep-MI/FastSurfer's past year of commit activity
    Python 634 Apache-2.0 156 15 4 Updated Sep 9, 2026
  • neuroreg Public

    Robust Image Registration Using PyTorch Backpropagation

    Deep-MI/neuroreg's past year of commit activity
    Python 4 MIT 2 0 0 Updated Sep 9, 2026
  • NeuroCade Public

    NeuroCade brings neuroimaging workflows into one local, researcher-friendly workspace: natively run neuroimaging tools like FastSurfer, track cases and analysis outputs. All functions are run with no code, but via the click of a button or an AI assistant.

    Deep-MI/NeuroCade's past year of commit activity
    Python 2 Apache-2.0 0 6 0 Updated Sep 9, 2026
  • neurolit Public

    Neuro Lesion Inpainting Tool (neuroLIT / FastSurfer-LIT) for lesion inpainting e.g. for whole brain segmentation and cortical surface reconstruction in the presence of tumor, surgical cavities or other abnormalities

    Deep-MI/neurolit's past year of commit activity
    Python 23 Apache-2.0 5 0 0 Updated Sep 4, 2026
  • fsqc Public

    A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

    Deep-MI/fsqc's past year of commit activity
    Python 82 MIT 18 0 0 Updated Sep 1, 2026
  • YADO Public

    [ECCV 2026] YADO: An universal denoising framework of structural (T1w/T2w/FLAIR) brain MRI

    Deep-MI/YADO's past year of commit activity
    Python 2 Apache-2.0 4 1 0 Updated Sep 1, 2026
  • YODA Public

    You Only Denoise once or Average (YODA) - A diffusion-based 2.5D medical image translation model with noise-supression

    Deep-MI/YODA's past year of commit activity
    Python 15 Apache-2.0 1 0 0 Updated Sep 1, 2026
  • Deep-MI.github.io Public

    Deep Medical Imaging Lab Webpage

    Deep-MI/Deep-MI.github.io's past year of commit activity
    HTML 4 MIT 16 0 0 Updated Aug 24, 2026
  • hipsta Public

    HIPSTA - a python package for hippocampal shape and thickness analysis

    Deep-MI/hipsta's past year of commit activity
    Python 7 MIT 3 0 0 Updated Aug 18, 2026
  • BrainPrint Public

    A python-only derivative of the original BrainPrint scripts

    Deep-MI/BrainPrint's past year of commit activity
    Python 18 MIT 9 0 0 Updated Jul 27, 2026
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