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GCSFS schedules future, which does not work in atexit callbacks, so we revert back to PyArrow. Additionally, we now use os._exit to explicitly set an exit code of 1 when an exception is raised during finalization because Python ignores exceptions in atexit callbacks by default.
Exceptions in atexit hooks are ignored and not reflected in the final exit code. Additionally, new futures cannot be scheduled in atexit hooks (after interpreter shutdown) so asyncio does not work.
Reminder to set shared binary permissions after updating
Add cell mass analysis to Jenkins test
Security updates
vEcoli Sherlock Documentation update
Gets around 64K char limit on each section in Apptainer definition file
More robust option handling
Cleaner Apptainer image definition
Protein counts validation skip gens
adding arginine to minimal media
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adding arginine to minimal media