Snakemake orchestration for the real-data pipeline#852

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cailmdaley wants to merge 9 commits into

feat/snakemake-orchestration

Commits on Jul 16, 2026

feat(orchestration): Snakemake workflow for the real-data pipeline (#848)

cailmdaley
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claude
committed
fix(orchestration): resolve {threads} at rule level, not inside params.cmd

cailmdaley
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claude
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fix(orchestration): carry original exposure names through the index; star-cat store naming

cailmdaley
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claude
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fix(orchestration): exposure-name pass-through, star-cat dirs, P0 run config

cailmdaley
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claude
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fix(orchestration): {output} placeholder inside params.cmd survives literally

cailmdaley
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claude
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fix(orchestration): shard the exposure forest — the module glob's shape is not cosmetic

cailmdaley
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claude
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fix(orchestration): carry a wrapper-scripts content hash into every rule's params

cailmdaley
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claude
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fix(orchestration): keep snakemake state and index off /project (hard-full quota)

Cail Daley
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claude
committed

Commits on Jul 17, 2026

fix(orchestration): drop exp_mask's dead per-unit star-cat input

Cail Daley
and
claude
committed