Program Mongoose migrations

[AustinSMueller]

No description provided.

[Copilot]

Pull request overview

This PR migrates “program/organization” data access in the backend from Prisma-centric patterns to Mongoose-backed DAOs, while renaming the service layer from Organization to Program and updating dependency injection throughout the runtime and tests.

Changes:

• Introduces a Mongoose Program model + Mongoose-backed ProgramDAO, and wires these into services/DAOs that previously relied on Prisma or native collections.
• Renames organization-facing services/params to program equivalents across backend services, GraphQL router wiring, and tests.
• Updates test suites/mocks to match the new Program APIs and DAO methods (findById, getProgramByID, etc.).

Reviewed changes

Copilot reviewed 32 out of 32 changed files in this pull request and generated 1 comment.

Show a summary per file

File	Description
lib/db-driver/constants/organization-constants.js	Renames exported constants namespace from ORGANIZATION to PROGRAM.
apps/backend/verifier/user-info-verifier.js	Removes unused organization constants import.
apps/backend/test/services/submission.service.test.js	Updates constructor arg naming and ProgramDAO mocking (findById).
apps/backend/test/services/submission.processSubmissionNodes.data-view.test.js	Renames organization-service mock to program-service mock in constructor wiring.
apps/backend/test/services/submission.listPotentialCollaborators.test.js	Renames mock dependency from organizationService to programService.
apps/backend/test/services/submission.getUploaderCLIConfig.test.js	Renames constructor dependency from organizationService to programService.
apps/backend/test/services/submission.getSubmissionSummary.test.js	Renames organization service mock to program service mock.
apps/backend/test/services/submission.getDataFileConfigs.test.js	Updates mock naming/comments for program service injection.
apps/backend/test/services/submission.editSubmissionCollaborators.test.js	Renames organization service mock to program service mock.
apps/backend/test/services/submission.createBatch.test.js	Renames organization service mock to program service mock.
apps/backend/test/services/submission._notifyConfigurationChange.test.js	Updates Submission constructor arg position/name for program service.
apps/backend/test/services/program.service.test.js	Converts tests from Organization service to Program service + PROGRAM constants.
apps/backend/test/services/data-submission.test.js	Updates tests to use Program service and PROGRAM statuses.
apps/backend/test/services/approved-studies.test.js	Renames organizationService to programService and updates called methods.
apps/backend/test/services/approved-studies-notification-error-handling.test.js	Renames organizationService to programService in notification error handling tests.
apps/backend/test/services/application.test.js	Updates Application service tests to depend on programService.
apps/backend/test/services/application.remindApplicationSubmission.test.js	Renames injected organizationService to programService.
apps/backend/test/services/application.deleteInactiveApplications.test.js	Renames injected organizationService to programService.
apps/backend/test/graphql-queries/edit-organization.test.js	Switches GraphQL query test to instantiate Program service.
apps/backend/test/graphql-queries/delete-inactive_submission.test.js	Updates submission integration-style test wiring to use programService.
apps/backend/test/graphql-queries/batch-job.test.js	Renames organizationService mock to programService mock across services.
apps/backend/test/dao/dao.submission.test.js	Updates SubmissionDAO tests to mock the new ProgramDAO dependency.
apps/backend/test/dao/dao.program.test.js	Rewrites ProgramDAO tests to target Mongoose model behavior (findOne/findById/aggregate/upsert).
apps/backend/services/submission.js	Renames injected organizationService to programService and switches program lookup to ProgramDAO.findById.
apps/backend/services/program-service.js	Renames Organization service to Program, updates APIs (get/edit/create) and uses Mongoose-backed ProgramDAO.
apps/backend/services/approved-studies.js	Replaces organizationService usage with programService and swaps ProgramDAO construction to Mongoose-backed DAO.
apps/backend/services/application.js	Renames organizationService to programService and updates program upsert/lookup calls.
apps/backend/routers/graphql-router.js	Wires GraphQL resolvers to Program service while retaining GraphQL field names (e.g., getOrganization).
apps/backend/mongoose/models/program.js	Adds Mongoose schema/model for programs stored in the historical organization collection.
apps/backend/dao/submission.js	Updates organization list retrieval to use Mongoose ProgramDAO and PROGRAM status constants.
apps/backend/dao/program.js	Replaces Prisma-based DAO with a MongooseGenericDAO-backed ProgramDAO (lookup + list + upsert).
apps/backend/app.js	Switches runtime wiring from Organization service to Program service for submission/application/approved-studies flows.

Comments suppressed due to low confidence (1)

apps/backend/services/program-service.js:323

• createProgram validates params.name with .trim() but then persists the untrimmed string (newOrg.name = params.name). This can store leading/trailing whitespace in the DB and bypass the duplicate-name check (which queries by trimmed name), creating hard-to-find near-duplicates.

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