Issues

• Fix FutureWarning from pandas 2.3.1 (ChainedAssignmentError: behaviour will change in pandas 3.0!)

  AllenInstitute/ipfx#577 · Filter by author t-b opened on Aug 19, 2025

• Stop using deprecated scipy.misc.imsave

  AllenInstitute/ipfx#576 · Filter by author t-b opened on Aug 19, 2025

• Fix marshmallow warnings

  AllenInstitute/ipfx#575 · Filter by author t-b opened on Aug 19, 2025

• Decruft requirements-test.txt

  AllenInstitute/ipfx#572 · Filter by author t-b opened on Aug 8, 2025

• Add pre-commit with black formatter and ruff

  enhancement
  AllenInstitute/ipfx#566 · Filter by author t-b opened on Jul 25, 2025
  1

• Documentation has warnings in output

  bug
  AllenInstitute/ipfx#564 · Filter by author t-b opened on Jul 15, 2025

• A question regarding data processing in the article "Consistent cross-modal identification of cortical neurons with coupled autoencoders."

  AllenInstitute/ipfx#562 · Filter by author beilouer opened on Oct 8, 2024
  1

• [note] [dev] Removal of set_container_sources() method in IPFX 2.0.0

  note
  AllenInstitute/ipfx#560 · Filter by author sheriferson opened on Dec 13, 2023

• Fail using the create_ephys_data_set to open nwb file in the patch-seq ephys dataset.

  AllenInstitute/ipfx#555 · Filter by author melancholy12 opened on May 26, 2023
  3

• Reconfigure spike time processing module creation to match NWB best practice

  enhancement
  AllenInstitute/ipfx#549 · Filter by author tmchartrand opened on Oct 27, 2022

• Update asset metadata for older exported NWBs at DANDI

  AllenInstitute/ipfx#548 · Filter by author tmchartrand opened on Oct 27, 2022

• Update metadata embedding code for cell IDs etc

  enhancement
  AllenInstitute/ipfx#547 · Filter by author tmchartrand opened on Oct 27, 2022

• Bypass bessel filter for Chirp sweeps sampled at 12.5K

  enhancement
  AllenInstitute/ipfx#546 · Filter by author ru57y34nn opened on Aug 30, 2022
  5

• script_utils.filter_results should not return None

  bug
  AllenInstitute/ipfx#544 · Filter by author gouwens opened on Jul 8, 2022
  

• Cell attached spontaneous firing feature extraction

  enhancement
  AllenInstitute/ipfx#541 · Filter by author ru57y34nn opened on Dec 15, 2021
  6

• Adapt pipeline processing for cells with multiple autobias target voltages

  enhancement
  AllenInstitute/ipfx#535 · Filter by author ru57y34nn opened on Oct 13, 2021

• Pre- and Post-stimulus baselines should be compared to target voltage

  enhancement
  AllenInstitute/ipfx#533 · Filter by author ru57y34nn opened on Sep 3, 2021
  3

• Read epochs info from nwb2 files

  enhancement
  AllenInstitute/ipfx#518 · Filter by author sgratiy opened on May 10, 2021
  5

• nwb_to_pdf fails with MIES-generated NWB2 files

  bug
  AllenInstitute/ipfx#512 · Filter by author tmchartrand opened on Apr 16, 2021

• Cells failing QC due to "electrode_0_pa missing value"

  enhancement
  AllenInstitute/ipfx#509 · Filter by author ru57y34nn opened on Mar 23, 2021
  13

  

• Sweeps that fail qc are incorrectly recorded in LIMS with the state "auto passed"

  AllenInstitute/ipfx#507 · Filter by author wbwakeman opened on Mar 10, 2021
  2

• add ability to set specific sweep checks as optional

  AllenInstitute/ipfx#499 · Filter by author wbwakeman opened on Feb 16, 2021
  2

• Memory leak when loading NWB2 files with default options

  bug
  AllenInstitute/ipfx#494 · Filter by author gouwens opened on Jan 21, 2021
  1

• Remove x_to_nwb conversion functionality from the repo

  enhancement
  AllenInstitute/ipfx#492 · Filter by author sgratiy opened on Jan 5, 2021
  1

• unequal number of datapoints in NWB conversion

  bug
  AllenInstitute/ipfx#473 · Filter by author ozsat opened on Sep 4, 2020
  2