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@AlgoLab

BIAS Lab - Bioinformatics and Experimental Algorithms lab

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  1. shark shark Public

    Mapping-free software for fishing relevant reads in an RNA-Seq sample

    C++ 19 1

  2. LightStringGraph LightStringGraph Public

    Lightweight String Graph Construction

    C++ 11 1

  3. galig galig Public

    A graph aligner

    Python 30 13

  4. HapCHAT HapCHAT Public

    Adaptive haplotype assembly for efficiently leveraging high coverage in long reads

    C++ 13 7

  5. gppf gppf Public

    General Parsimony Phylogeny models from Frequencies

    Python 2 1

  6. PIntron PIntron Public

    A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence

    C 5 6

Repositories

Showing 10 of 74 repositories
  • pygfa Public

    A library to manage GFA files

    AlgoLab/pygfa’s past year of commit activity
    Python 7 MIT 3 3 0 Updated Feb 20, 2026
  • pangebin Public

    Extracting plasmid contigs from Pangenome graphs of bacterial isolates.

    AlgoLab/pangebin’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Feb 5, 2026
  • pantas Public

    Differential quantification of alternative splicing events on spliced pangenome graphs

    AlgoLab/pantas’s past year of commit activity
    Python 15 GPL-3.0 1 2 1 Updated Jan 30, 2026
  • PangeBlocks-wide Public

    PangeBlocks for Human Genomes

    AlgoLab/PangeBlocks-wide’s past year of commit activity
    Rust 0 MIT 0 0 0 Updated Jan 21, 2026
  • AlgoLab/forgenom_summerschool2025’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Oct 21, 2025
  • clib Public Forked from clibs/clib

    Package manager for the C programming language.

    AlgoLab/clib’s past year of commit activity
    C 1 MIT 313 0 0 Updated Sep 29, 2025
  • RecGraph Public

    Optimal sequence-to-graph alignment with recombinations

    AlgoLab/RecGraph’s past year of commit activity
    Rust 40 MIT 3 3 0 Updated Jul 25, 2025
  • pangebin-doc Public

    Clone of overleaf Pangebin V2 document

    AlgoLab/pangebin-doc’s past year of commit activity
    TeX 0 0 0 0 Updated Jul 4, 2025
  • cpm2025 Public

    Combinatorial Pattern Matching 2025

    AlgoLab/cpm2025’s past year of commit activity
    HTML 2 GPL-2.0 0 0 0 Updated Jun 23, 2025
  • rec_align_exps Public

    Experiments for RecAlign

    AlgoLab/rec_align_exps’s past year of commit activity
    Python 0 0 0 0 Updated May 4, 2025

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