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0xSynapse/README.md

Hui Zhao (@0xSynapse)

Systems & AI Researcher · Founder of Heurion Research

为临床医学与自治智能体构建可验证的系统底座 · The human link between users and builders

Heurion Blog UOMP Standards Research Email

Official Website • Technical Blog • Clinical Workstation • Projects • Systems Monographs • Publications • @heurion-org


About Me

I am an independent Systems & AI Researcher and Product Architect based in Rotterdam, Netherlands, and the founder of Heurion Research (heurion-org). My work focuses on contract-guarded clinical research intelligence, transactional operating system runtimes for autonomous agents, and local-first sovereign memory protocols.

  • Thesis: Models generate probabilities; science demands certainty. Bound to transactional state, intelligence becomes infrastructure.(模型长于推理,科学始于确定。锚定契约内核,智能方成底座。)
  • Focus Areas: Agent Operating Systems (Rust, CoW VFS, Seatbelt/Bubblewrap, MCP/A2A) · Clinical Research AI & Collaborative CRDT Engines (TypeScript, ProseMirror/Yjs, Biostatistics, PHI Privacy) · Sovereign Memory Protocols (UOMP).
  • Environment: Linux & macOS only (aarch64 / Apple Silicon).

Open-Source Projects

Repository Scope & Highlights Stack
heurion-org/heurion
Heurion 2.0 & OmniCanvas · heurion.org · heurion.org/blog
Contract-Guarded Clinical Research AI Workstation & Studio — Dual-surface ProseMirror + Yjs CRDT (96.4% .docx/.pptx fidelity, 0.128ms per-turn rollback), 4-way PubMed/PMC/OpenAlex citation verification, 2-stage local PHI gatekeeper (98.6%–99.6% recall), sandboxed biostatistics, and 3-layer self-evolving memory (-49% guard rejections). TypeScript Node.js 24 Yjs Python Rust/WASM MCP
heurion-org/aegis-os
Aegis OS (aegis-os)
Transactional Multi-Tenant Agent Operating System Runtime — Eliminates coding-agent authorization fatigue (-90.7% to -97.9% prompts across 28,087 real calls; 1.12% IPR) via 0.42ms per-file / 6.3ms repo-wide Copy-on-Write shadow workspaces (APFS clonefile / Btrfs FICLONE), 4-tier LCS Diff3 auto-merge (98.7%), Seatbelt/Bubblewrap sandboxing (0.0% ASR across 80 attacks), and L7 $AOS_SECRET_* egress DLP. Rust APFS/Btrfs CoW Seatbelt Bubblewrap MCP A2A
0xSynapse/uomp-core
User-Owned Memory Protocol · uomp.org
Local-First Sovereign Memory Protocol (UOMP) — Keeps personal memory in local SQLite (~/.uomp) and grants AI agents temporary, session-bound, tag/key-scoped access via short-lived EdDSA-signed JWT Capability Tokens and a local Memory Guard. TypeScript SQLite EdDSA JWT CLI / SDK
Systems & Security Utilities
ironmac · archdoctor · openharmony-mac-build
Linux & macOS Systems Engineering — ironmac (audit-ready macOS Web3/keychain security suite & MCP server), archdoctor (Rust CLI for Arch Linux pacman/systemd health triage & history diffs), and openharmony-mac-build (native arm64_virt OpenHarmony build toolchain on Apple Silicon). Rust macOS Security Arch Linux ARM64 QEMU

Technical Blog & Systems Monographs (heurion.org/blog · English)

Long-form bilingual systems monographs dissecting the architecture, formal invariants, and production benchmarks behind Heurion 2.0, OmniCanvas, and Aegis OS:

# Monograph & Thesis Core Architecture & Empirical Benchmarks Read
01 Why Free-Form Shell Agents Fail at Research Manuscripts: Dual-Surface CRDT & Byte-Preserving OOXML Patch Architecture
为什么自由 Shell 智能体在科研论文写作中会失效:双表面 CRDT 与字节级 OOXML 补丁架构
• Dual-Surface ProseMirror + Yjs CRDT: Unifies rich-text canvas and Annotated Markdown ({#id} block primitives)
• 2-Level Byte-Preserving OOXML Engine: 100% binary slice identity on untouched blocks + Run-level LCS patchParagraph (96.4% vs. 21.4% formatting retention)
• Selective Attribution Rollback: 0.128ms non-contiguous per-turn undo (revertByNodes)
English
中文专论
02 Why Software Must Be Rebuilt with AI-Native Interfaces: Human-Agent Capability Parity as New Infrastructure
为什么软件必须为 AI Agent 重建原生接口:人机同权(Capability Parity)与新基础设施
• Capability & Permission Parity Axiom: Agent Capability = User Capability & Agent Permission = User Permission
• Zero-Fork Loopback & 3-Tier Governance: In-process 256-bit RAM secret, Green/Yellow/Red zones, and 403 anti-self-approval Confirmation Cards
• End-to-End Auditable Escalations & CI Reflection: Full audit trails for permission requests + 64+ route-to-tool CI invariants
English
中文专论
03 Beyond Git Feature Branches: Shadow Workspaces, Advisory File Claims, and Transactional Auto-Merge for Human-Agent Collaboration
超越 Git 分支:面向人机与多智能体协作的影子工作区、文件锁与事务归并范式
• Trunk-Anchored CoW Shadow Workspaces: 0.42ms per-file APFS clonefile / Btrfs FICLONE without .git branch proliferation
• Proactive Coordination: Advisory TTL file claims (coord_claim) + zero-polling piggybacked _aegis_inbox IPC
• 4-Tier LCS Diff3 & Hash-Chained Audit Ledger: 98.7% conflict-free auto-merge with verify_cmd gate + -90.7% to -97.9% prompt reduction
English
中文专论

Publications & Protocol Specifications

  1. Heurion 2.0: A Contract-Guarded Dual-Surface Architecture with Self-Evolving Memory for Citation-Grounded Clinical Research Authoring
    Hui Zhao (Heurion Research, Rotterdam, Netherlands) · cs.AI / cs.CL / cs.HC / cs.MA (2026)
    Paper PDF (heurion/paper/main.pdf) · LaTeX Source (main.tex) · Evaluation Suite (paper/benchmarks) · Code (heurion-org/heurion)

  2. Aegis OS: A Transactional Multi-Tenant Operating System Runtime for Eliminating Authorization Fatigue in Autonomous Coding Agents
    Hui Zhao (Heurion Research, Rotterdam, Netherlands) · cs.OS / cs.CR / cs.AI / cs.SE · arXiv Preprint & ACM TOSEM Submission (2026)
    Paper PDF (aegis_os_arxiv_preprint.pdf) · LaTeX Source (main.tex) · Benchmark Report (BENCHMARK_REPORT.md) · Code (heurion-org/aegis-os)

  3. UOMP-Draft-00: User-Owned Memory Protocol (UOMP) — Local-First Capability-Based Memory Authorization for AI Agents
    Hui Zhao (@0xSynapse) · Public RFC Draft (2026)
    RFC Specification (specs/draft-00.md) · English Spec (draft-00.en.md) · Website (uomp.org) · Code (0xSynapse/uomp-core)


Hui Zhao (@0xSynapse) · Heurion Research
heurion.org · heurion.org/blog · uomp.org · github.com/heurion-org · Email: huizhao@heurion.org

Pinned Loading

  1. heurion heurion Public

    Heurion 2.0 & OmniCanvas: Contract-Guarded Clinical Research AI Workstation & Collaborative CRDT Studio (ProseMirror/Yjs, 2-Stage PHI Funnel, Self-Evolving Memory, MCP & AAP-1.0)

    TypeScript 1