Issues

• Foldseek results show unclassified under taxonomy for all AFDB

  soedinglab/MMseqs2-App#130 · Filter by author mleon059 opened on Sep 3, 2026

• Foldseek search gives Conflicting TM-scores

  soedinglab/MMseqs2-App#124 · Filter by author tjmier opened on Apr 21, 2026

• Question: Current hardware recommendation to run MMseqs2 for LocalColabFold& Co

  soedinglab/MMseqs2-App#113 · Filter by author dirrei opened on Sep 8, 2025
  1

• Issues downloading databases using docker-compose

  soedinglab/MMseqs2-App#112 · Filter by author eyal-converge opened on Jun 13, 2025
  2

• API, can one use their own local database?

  soedinglab/MMseqs2-App#109 · Filter by author Fzhang1992 opened on Apr 14, 2025

• Sequence conservation annotation

  enhancement
  Feature

  soedinglab/MMseqs2-App#108 · Filter by author gamcil opened on Apr 3, 2025
  

• [Question] Is there a way to add additional metadata columns to MMseqs2-App browser output?

  soedinglab/MMseqs2-App#105 · Filter by author jolespin opened on Jan 15, 2025
  1

• base URL in the index.html

  soedinglab/MMseqs2-App#93 · Filter by author JackKay404 opened on Oct 28, 2024
  2

• Local Foldseek searches are no longer working

  soedinglab/MMseqs2-App#91 · Filter by author JackKay404 opened on Apr 29, 2024
  6

• jobs stuck in PENDING status with local mmseqs-web API

  soedinglab/MMseqs2-App#85 · Filter by author reyjul opened on Nov 23, 2023
  2

• Running it in kubernetes

  soedinglab/MMseqs2-App#83 · Filter by author titansmc opened on Nov 2, 2023
  5

• Foldseek all database view rework

  soedinglab/MMseqs2-App#82 · Filter by author martin-steinegger opened on Oct 31, 2023

• Possible to add single or multiple sequences to existing database

  soedinglab/MMseqs2-App#78 · Filter by author pschmidtke opened on Jul 6, 2023

• Pass --max-seqs through GUI or server API?

  soedinglab/MMseqs2-App#75 · Filter by author mezarque opened on Apr 24, 2023

• pairaln mode does not support the binary version of the taxonomy files

  soedinglab/MMseqs2-App#53 · Filter by author athbaltzis opened on Aug 11, 2022
  5

• Full target/query alignment being truncated in web UI

  soedinglab/MMseqs2-App#50 · Filter by author scollins-at-indigo opened on May 31, 2022
  3

• Can query caching be turned off?

  soedinglab/MMseqs2-App#21 · Filter by author josemduarte opened on Jun 16, 2021
  1