Merge pull request #173 from smithlabcode/v142-prep

v142 prep

Author: andrewdavidsmith

MAINTAINERS.md

@@ -67,6 +67,6 @@ The image can be pulled by one of the following commands.
 ```bash
 docker pull ghcr.io/smithlabcode/dnmtools:latest
 docker pull ghcr.io/smithlabcode/dnmtools:[7-DIGIT SHA]
-docker pull ghcr.io/smithlabcode/dnmtools:v[VERSION NUMBER] #(e.g. v1.4.1)
+docker pull ghcr.io/smithlabcode/dnmtools:v[VERSION NUMBER] #(e.g. v1.4.2)
 ```
 

README.md

@@ -12,7 +12,7 @@ sequencing (RRBS). These tools focus on overcoming the computing
 challenges imposed by the scale of genome-wide DNA methylation data,
 which is usually the early parts of data analysis.
 
-## Installing release 1.4.1
+## Installing release 1.4.2
 
 The documentation for DNMTools can be found
 [here](https://dnmtools.readthedocs.io). But if you want to install
@@ -41,14 +41,14 @@ repo, it is easiest if all dependencies are available through conda.
 
 ### Configuration
 
-* Download [dnmtools-1.4.1.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.4.1/dnmtools-1.4.1.tar.gz).
+* Download [dnmtools-1.4.2.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.4.2/dnmtools-1.4.2.tar.gz).
 * Unpack the archive:
 ```console
-tar -zxvf dnmtools-1.4.1.tar.gz
+tar -zxvf dnmtools-1.4.2.tar.gz
 ```
 * Move into the dnmtools directory and create a build directory:
 ```console
-cd dnmtools-1.4.1 && mkdir build && cd build
+cd dnmtools-1.4.2 && mkdir build && cd build
 ```
 * Run the configuration script:
 ```console
@@ -137,7 +137,7 @@ docker tag ghcr.io/smithlabcode/dnmtools:latest dnmtools:latest
 
 You can also install the image for a particular vertion by running
 ```console
-docker pull ghcr.io/smithlabcode/dnmtools:v[VERSION NUMBER] #(e.g. v1.4.1)
+docker pull ghcr.io/smithlabcode/dnmtools:v[VERSION NUMBER] #(e.g. v1.4.2)
 ```
 Not all versions have corresponding images; you can find available images
 [here](https://github.com/smithlabcode/dnmtools/pkgs/container/dnmtools).

configure.ac

@@ -14,7 +14,7 @@ dnl but WITHOUT ANY WARRANTY; without even the implied warranty of
 dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 dnl General Public License for more details.
 
-AC_INIT([dnmtools], [1.4.1], [andrewds@usc.edu],
+AC_INIT([dnmtools], [1.4.2], [andrewds@usc.edu],
         [dnmtools], [https://github.com/smithlabcode/dnmtools])
 dnl the config.h is #included in the sources for version info
 AC_CONFIG_HEADERS([config.h])

data/md5sum.txt

@@ -18,5 +18,5 @@ ec6a686617cad31e9f7a37a3d378e6ed  tests/two_epialleles.states
 93e38b20d162062a5d147c4290095a13  tests/mlml.out
 d947fe3d61ef7b1564558a69608f0e64  tests/methylome.pmd
 7d481d31e4316e97d519838f4887b10d  tests/reads.sam
-4b038c82b51be15307d4969e859e864f  tests/reads.fmt.sam
-a7b94dd23f308f653fbfab98ec7b62d8  tests/reads.fmt.srt.uniq.sam
+466e2715f0c677593e84b3790efbec6e  tests/reads.fmt.sam
+5583ebe1b689159f8eb0a93f32e2fd48  tests/reads.fmt.srt.uniq.sam

docs/content/quickstart.md

@@ -72,14 +72,14 @@ would need to be activated when you want to use dnmtools.
 
 ### Configuration
 
-* Download [dnmtools-1.4.1.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.4.1/dnmtools-1.4.1.tar.gz).
+* Download [dnmtools-1.4.2.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.4.2/dnmtools-1.4.2.tar.gz).
 * Unpack the archive:
 ```console
-$ tar -zxvf dnmtools-1.4.1.tar.gz
+$ tar -zxvf dnmtools-1.4.2.tar.gz
 ```
 * Move into the dnmtools directory and create a build directory:
 ```console
-$ cd dnmtools-1.4.1
+$ cd dnmtools-1.4.2
 $ mkdir build && cd build
 ```
 * Run the configuration script: