Issues

• how to import variant calling format (VCF)

  parklab/MuSiCal#91 · Filter by author Overcraft90 opened on Jul 19, 2026

• Best practice for WES signature assignment catalog selection in MuSiCal

  parklab/MuSiCal#90 · Filter by author Sawakotx opened on Dec 20, 2025
  2

• The job stops after finding lambda_tilde

  parklab/MuSiCal#89 · Filter by author liumoLM opened on Mar 9, 2025
  1

• Identifying New Signatures Present in my Cohort

  parklab/MuSiCal#88 · Filter by author gretherv opened on Feb 18, 2025
  2

• how to generate TriNucFreq_Weights.csv

  parklab/MuSiCal#87 · Filter by author timchu90 opened on Feb 18, 2025
  3

• Gini coefficient calculation does not deal with all-zero inputs

  parklab/MuSiCal#86 · Filter by author Hu-JIN opened on Feb 14, 2025

• Inconsistency in the example script on restricting to tumor type-specific signatures during refitting

  parklab/MuSiCal#85 · Filter by author Hu-JIN opened on Feb 10, 2025

• How to account for cohort stratification?

  parklab/MuSiCal#84 · Filter by author vanshikabidhan opened on Jan 9, 2025
  1

• "maximum number of iterations reached" in de novo signatures extraction

  parklab/MuSiCal#83 · Filter by author Spirit-booze opened on Oct 31, 2024
  2

• Matching and Referring - Signature Assignment

  parklab/MuSiCal#82 · Filter by author shengxindaniu opened on Oct 17, 2024

• MuSiCal looses signatures when refitting against reduced set of signatures

  parklab/MuSiCal#81 · Filter by author quail768 opened on Oct 11, 2024
  1

• TypeError: _nnls.nnls() missing required argument 'n' (pos 3)

  parklab/MuSiCal#80 · Filter by author andreyurch opened on Sep 19, 2024
  1