Issues

AttributeError: 'csr_matrix' object has no attribute 'A' when running clf.fit(adata.X).predict()
mousepixels/sanbomics_scripts#28 · opened on Jan 25, 2025
Issues with scvelo
mousepixels/sanbomics_scripts#27 · opened on Oct 10, 2024
ribosomal genes
mousepixels/sanbomics_scripts#26 · opened on Sep 18, 2024
Salmon index issue
mousepixels/sanbomics_scripts#25 · opened on Feb 19, 2024
Error in import_atac function
mousepixels/sanbomics_scripts#24 · opened on Jan 20, 2024
1
single_cell_analysis_complete_class.ipynb
mousepixels/sanbomics_scripts#23 · opened on Dec 20, 2023
Error :ValueError: Found array with 0 feature(s) (shape=(249101, 0)) while a minimum of 1 is required.
mousepixels/sanbomics_scripts#22 · opened on Nov 30, 2023
Issue convert anndata to seurat object
mousepixels/sanbomics_scripts#21 · opened on Sep 27, 2023
ERROR in pseudobulk_pyDeseq2.ipynb with pseudo replicates
mousepixels/sanbomics_scripts#19 · opened on Aug 24, 2023
SoupX tutorial: meta.data nCount_RNA contains information from previous RNA assay
mousepixels/sanbomics_scripts#18 · opened on Aug 8, 2023
No fragment file present when extracting gene activity
mousepixels/sanbomics_scripts#17 · opened on Jul 26, 2023
local variable 'id_length' referenced before assignment
mousepixels/sanbomics_scripts#15 · opened on May 2, 2023
go in R question about baseMean filtering
mousepixels/sanbomics_scripts#14 · opened on Mar 20, 2023
Assigning mitocondrial genes variable
mousepixels/sanbomics_scripts#12 · opened on Jan 19, 2023
1
Differential expression
mousepixels/sanbomics_scripts#11 · opened on Dec 9, 2022
6
CellBender scRNA-seq tutorial
mousepixels/sanbomics_scripts#10 · opened on Nov 27, 2022