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Docker Validation Status

Recent portability checks (Ubuntu 24.04 Docker, master branch):

  • docker build --no-cache --target suite-base -f docker/Dockerfile --build-arg MAKE_JOBS=8 . passed.
  • scripts/docker/run_smokes_tier_a.sh passed.
  • scripts/docker/run_smokes_tier_b.sh with STORAGE=/storage produced:
    • pass: run_flex_smoke, run_cbub_regression_test
    • skip: run_cr_compat_integration_smoke (ASAN-only path), run_cr_multi_smoke (external script dependency), run_unsorted_cbub_smoke_test (missing probes fixture)
    • fail: test_cr_compat_crispr_calling (missing expected outs/* files in this containerized fixture run)
  • Runtime split verified:
    • suite-base and test-tier-a have no Python runtime
    • test-tier-b includes Python runtime for fixture-backed tests
  • suite-base contains: STAR, star_feature_call, slam_requant, pileup_snp, flexfilter (run_flexfilter_mex alias), and remove_y_reads.