diff --git a/.claude/scripts/test_setup_script_docs.sh b/.claude/scripts/test_setup_script_docs.sh new file mode 100755 index 0000000..1573773 --- /dev/null +++ b/.claude/scripts/test_setup_script_docs.sh @@ -0,0 +1,18 @@ +#!/usr/bin/env bash +# Copy the repository, run setup_project.sh with a new name and build the docs site of the copy, +# to check that the rename reaches the Astro config and the API pages. +set -euo pipefail +REPO="$(cd "$(dirname "${BASH_SOURCE[0]}")/../.." && pwd)" +PYTHON="${PYTHON:-$REPO/.venv-docs/bin/python}" +WORK="$(mktemp -d)" +trap 'rm -rf "$WORK"' EXIT +rsync -a --exclude .git --exclude node_modules --exclude dist --exclude .astro --exclude .venv-docs "$REPO/" "$WORK/" +cd "$WORK" +bash setup_project.sh my-test-app +grep -q "const pythonPackage = 'my_test_app'" docs/astro.config.mjs +grep -q "/api/my_test_app/" docs/src/components/Header.astro +grep -q "from my_test_app.main import main" docs/src/content/docs/getting-started/quickstart.md +cp -cR "$REPO/docs/node_modules" docs/node_modules 2>/dev/null || cp -R "$REPO/docs/node_modules" docs/node_modules +cd docs && DOCS_PYTHON="$PYTHON" npm run build 2>&1 | tail -25 +test -f dist/api/my_test_app/main/index.html +echo "setup script + docs build: OK" diff --git a/.github/actions/build-docs/action.yml b/.github/actions/build-docs/action.yml deleted file mode 100644 index 8400c21..0000000 --- a/.github/actions/build-docs/action.yml +++ /dev/null @@ -1,36 +0,0 @@ -name: "Build Documentation" -description: "Build Sphinx documentation" -inputs: - python-version: - description: "Python version to use" - required: false - default: "3.10" - treat-warnings-as-errors: - description: "Treat warnings as errors (-W flag)" - required: false - default: "false" -runs: - using: "composite" - steps: - - name: Set up Python - uses: actions/setup-python@v5 - with: - python-version: ${{ inputs.python-version }} - - - name: Install pandoc - shell: bash - run: | - sudo apt-get update - sudo apt-get install -y pandoc - - - name: Install Python dependencies - shell: bash - run: | - python -m pip install --upgrade pip - pip install ".[docs]" - - - name: Build Sphinx docs - shell: bash - run: | - cd docs - make html diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml new file mode 100644 index 0000000..d0c2e6f --- /dev/null +++ b/.github/workflows/docs.yml @@ -0,0 +1,73 @@ +name: Docs + +# The Astro + Starlight site in docs/: hand-written pages, the executed tutorials and the API +# reference. Built on every push and pull request; deployed to GitHub Pages from main. + +on: + push: + branches: ["main", "devel"] + pull_request: + branches: ["main", "devel"] + workflow_dispatch: + +permissions: + contents: read + pages: write + id-token: write + +concurrency: + group: docs-${{ github.ref }} + cancel-in-progress: true + +jobs: + build: + runs-on: ubuntu-latest + defaults: + run: + shell: bash + steps: + - uses: actions/checkout@v4 + + - uses: actions/setup-python@v5 + with: + python-version: "3.12" + cache: pip + + - uses: actions/setup-node@v4 + with: + node-version: 22 + cache: npm + cache-dependency-path: docs/package-lock.json + + - name: Install the package with the docs extra + run: | + python -m pip install --upgrade pip + pip install -e ".[docs]" + python -m ipykernel install --user --name python3 + + - name: Execute and convert the tutorials + run: | + python docs/tools/notebooks.py execute + python docs/tools/notebooks.py convert --strict + + - name: Build the site + working-directory: docs + run: | + npm ci + npm run check:mdx + DOCS_PYTHON="$(command -v python)" npm run build + + - uses: actions/upload-pages-artifact@v3 + with: + path: docs/dist + + deploy: + needs: build + if: github.event_name != 'pull_request' && github.ref == 'refs/heads/main' + runs-on: ubuntu-latest + environment: + name: github-pages + url: ${{ steps.deployment.outputs.page_url }} + steps: + - id: deployment + uses: actions/deploy-pages@v4 diff --git a/.github/workflows/publish_docs.yml b/.github/workflows/publish_docs.yml deleted file mode 100644 index 88833dd..0000000 --- a/.github/workflows/publish_docs.yml +++ /dev/null @@ -1,44 +0,0 @@ -name: Deploy docs to GitHub Pages - -on: - push: - branches: ["devel"] - workflow_dispatch: - -permissions: - contents: read - pages: write - id-token: write - -concurrency: - group: "pages" - cancel-in-progress: false - -jobs: - build-and-deploy: - runs-on: ubuntu-latest - environment: - name: github-pages - url: ${{ steps.deployment.outputs.page_url }} - - steps: - - name: Checkout - uses: actions/checkout@v4 - - - name: Build documentation - uses: ./.github/actions/build-docs - with: - python-version: "3.10" - treat-warnings-as-errors: "false" - - - name: Setup Pages - uses: actions/configure-pages@v5 - - - name: Upload built docs - uses: actions/upload-pages-artifact@v3 - with: - path: docs/build/html/ - - - name: Deploy to GitHub Pages - id: deployment - uses: actions/deploy-pages@v4 diff --git a/.github/workflows/publish_pypi.yml b/.github/workflows/publish_pypi.yml index cf03ba3..31f0a54 100644 --- a/.github/workflows/publish_pypi.yml +++ b/.github/workflows/publish_pypi.yml @@ -17,12 +17,12 @@ jobs: steps: - name: Checkout repository - uses: actions/checkout@v3 + uses: actions/checkout@v4 - name: Set up Python - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: - python-version: "3.10" + python-version: "3.12" - name: Install build tools run: | diff --git a/.github/workflows/static_analysis.yml b/.github/workflows/static_analysis.yml index fce5a85..319d7a1 100644 --- a/.github/workflows/static_analysis.yml +++ b/.github/workflows/static_analysis.yml @@ -10,12 +10,8 @@ on: - main - devel -defaults: - run: - shell: bash - jobs: - pre-commit: + ruff: runs-on: ubuntu-latest steps: - name: Checkout the code @@ -26,35 +22,23 @@ jobs: with: python-version: "3.10" - - name: Run pre-commit - uses: pre-commit/action@v3.0.1 + - name: Install ruff + run: pip install ruff - cloc: - runs-on: ubuntu-latest - steps: - - name: Checkout the code - uses: actions/checkout@v4 + - name: Lint + run: ruff check . - - name: Download and run cloc - run: | - curl -s https://raw.githubusercontent.com/AlDanial/cloc/master/cloc > cloc - chmod +x cloc - ./cloc --version - ./cloc $(git ls-files) + - name: Check formatting + run: ruff format --check . - mypy: + readme: runs-on: ubuntu-latest - continue-on-error: true steps: - name: Checkout the code uses: actions/checkout@v4 - - name: Set up Python - uses: actions/setup-python@v5 - with: - python-version: "3.10" + - name: Set up Quarto + uses: quarto-dev/quarto-actions/setup@v2 - - name: Type checking with mypy - run: | - pip install mypy - mypy src/ || true + - name: Check that README.md is rendered from README.qmd + run: make readme-check diff --git a/.github/workflows/test_docs.yml b/.github/workflows/test_docs.yml deleted file mode 100644 index dce6436..0000000 --- a/.github/workflows/test_docs.yml +++ /dev/null @@ -1,36 +0,0 @@ -name: Test Documentation Build - -on: - push: - branches: - - main - - devel - pull_request: - branches: - - main - - devel - -defaults: - run: - shell: bash - -jobs: - test-docs: - runs-on: ubuntu-latest - steps: - - name: Checkout - uses: actions/checkout@v4 - - - name: Build documentation - uses: ./.github/actions/build-docs - with: - python-version: "3.10" - treat-warnings-as-errors: "true" - - - name: Upload docs artifact - uses: actions/upload-artifact@v4 - if: always() - with: - name: documentation - path: docs/build/html/ - retention-days: 7 diff --git a/.github/workflows/test_pytest.yml b/.github/workflows/test_pytest.yml index 57c03cc..470a25a 100644 --- a/.github/workflows/test_pytest.yml +++ b/.github/workflows/test_pytest.yml @@ -13,23 +13,20 @@ on: jobs: pytest: runs-on: ubuntu-latest + strategy: + fail-fast: false + matrix: + python-version: ["3.10", "3.11", "3.12", "3.13"] steps: - name: Checkout code uses: actions/checkout@v4 - - name: Set up Python + - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v5 with: - python-version: "3.10" - - - name: Cache pip - uses: actions/cache@v4 - with: - path: ~/.cache/pip - key: ${{ runner.os }}-pip-${{ hashFiles('**/pyproject.toml') }} - restore-keys: | - ${{ runner.os }}-pip- + python-version: ${{ matrix.python-version }} + cache: pip - name: Install project run: | diff --git a/.github/workflows/test_setup_script.yml b/.github/workflows/test_setup_script.yml index c1e9e4c..170a5d8 100644 --- a/.github/workflows/test_setup_script.yml +++ b/.github/workflows/test_setup_script.yml @@ -24,7 +24,7 @@ jobs: - name: Set up Python uses: actions/setup-python@v5 with: - python-version: "3.10" + python-version: "3.12" - name: Run setup script run: | diff --git a/.github/workflows/test_tutorials.yml b/.github/workflows/test_tutorials.yml index 58a7e81..ec70428 100644 --- a/.github/workflows/test_tutorials.yml +++ b/.github/workflows/test_tutorials.yml @@ -13,34 +13,27 @@ on: jobs: tutorials: runs-on: ubuntu-latest + strategy: + fail-fast: false + matrix: + python-version: ["3.10", "3.13"] steps: - name: Checkout code uses: actions/checkout@v4 - - name: Set up Python + - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v5 with: - python-version: "3.10" - - - name: Cache pip - uses: actions/cache@v4 - with: - path: ~/.cache/pip - key: ${{ runner.os }}-pip-${{ hashFiles('**/pyproject.toml') }} - restore-keys: | - ${{ runner.os }}-pip- - - - name: Install dependencies - run: | - sudo apt-get update - sudo apt-get install -y pandoc + python-version: ${{ matrix.python-version }} + cache: pip - name: Install project run: | pip install --upgrade pip - pip install ".[dev]" + pip install ".[docs]" + python -m ipykernel install --user --name python3 - name: Execute tutorials run: | - jupyter nbconvert --to notebook --execute tutorials/*.ipynb --output-dir=/tmp --ExecutePreprocessor.timeout=300 + python docs/tools/notebooks.py execute --force diff --git a/.gitignore b/.gitignore index 6548c34..bee74c7 100644 --- a/.gitignore +++ b/.gitignore @@ -69,9 +69,7 @@ instance/ # Scrapy stuff: .scrapy -# Sphinx documentation -docs/_build/ -docs/source/tutorials/ +# Documentation site (docs/.gitignore has the Astro build output) # PyBuilder .pybuilder/ @@ -172,4 +170,7 @@ cython_debug/ # Unit test output junit/ -docs/source/api/_autosummary/ + +# Quarto +.quarto/ +README_files/ diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index bbbbcf4..28687ad 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -39,11 +39,16 @@ run: - build/* pages: + image: node:22 + before_script: [] script: - - pip install sphinx sphinx-rtd-theme - - cd doc - - make html - - mv build/html/ ../public/ + - apt-get update && apt-get install -y python3 python3-pip python3-venv + - python3 -m venv venv && source venv/bin/activate + - pip install -e ".[docs]" + - python docs/tools/notebooks.py execute + - python docs/tools/notebooks.py convert + - cd docs && npm ci && DOCS_PYTHON="$(command -v python)" npm run build + - mv dist ../public artifacts: paths: - public diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 61316d0..4ef248e 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -12,10 +12,10 @@ repos: - repo: https://github.com/kynan/nbstripout rev: 0.9.0 hooks: - - id: nbstripout # strip jupyter noteook output + - id: nbstripout # strip jupyter notebook output - repo: https://github.com/astral-sh/ruff-pre-commit rev: v0.9.1 hooks: - id: ruff - args: [--fix, --select, I] + args: [--fix] - id: ruff-format diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..8e5052a --- /dev/null +++ b/Makefile @@ -0,0 +1,41 @@ +# README (Quarto) and the documentation site (docs/, Astro + Starlight). +# Notebook tool: docs/tools/notebooks.py. +PYTHON ?= python +NOTEBOOKS = $(PYTHON) docs/tools/notebooks.py +DOCS_ENV = DOCS_PYTHON=$(shell $(PYTHON) -c "import sys; print(sys.executable)") +FORCE ?= + +.PHONY: help readme readme-check docs-install docs-notebooks docs-dev docs-build docs-preview docs-clean + +help: ## list the targets + @grep -E '^[a-zA-Z_-]+:.*?## ' $(MAKEFILE_LIST) | awk 'BEGIN {FS = ":.*?## "}; {printf " %-16s %s\n", $$1, $$2}' + +readme: ## render README.md from README.qmd with quarto + quarto render README.qmd --to gfm + +readme-check: ## fail if README.md is out of date with README.qmd + $(MAKE) readme + git diff --exit-code README.md + +docs-install: ## Python docs extra and the npm packages + $(PYTHON) -m pip install -e ".[docs]" + cd docs && npm ci + +docs-notebooks: ## execute the changed tutorials and convert all of them (FORCE=1 reruns all) + $(NOTEBOOKS) execute $(if $(FORCE),--force,) + $(NOTEBOOKS) convert + +docs-dev: ## live preview at http://localhost:4321/template-python/ + $(NOTEBOOKS) convert + cd docs && $(DOCS_ENV) DOCS_VALIDATE_LINKS=false npm run dev + +docs-build: ## the static site in docs/dist, as in CI + $(NOTEBOOKS) convert + cd docs && npm run check:mdx && $(DOCS_ENV) npm run build + +docs-preview: ## serve docs/dist + cd docs && npm run preview + +docs-clean: ## remove generated pages, assets and build output + $(NOTEBOOKS) clean + rm -rf docs/dist docs/.astro diff --git a/README.md b/README.md index 8f49086..969cf52 100644 --- a/README.md +++ b/README.md @@ -1,72 +1,96 @@ # template-python -Template repository for python projects -Documentation: https://max-models.github.io/template-python/ + -# Install +Template repository for Python projects: a `src/` package with a console +entry point, `pytest` tests, GitHub Actions for tests, static analysis, +tutorials, documentation and PyPI publishing, and an +[Astro](https://astro.build/) + +[Starlight](https://starlight.astro.build/) documentation site. -Create and activate python environment +Documentation: +## Use the template + +Create a repository from this template, then rename the package: + +``` bash +bash setup_project.sh my-app +rm setup_project.sh ``` + +This replaces `template-python` with `my-app` everywhere, moves +`src/app` to `src/my_app`, and points the entry point, tests and docs at +it. + +## Install + +Create and activate a Python environment (3.10 or newer): + +``` bash python -m venv env source env/bin/activate pip install --upgrade pip ``` -Install the code and requirements with pip +Install the code and requirements with pip: -``` +``` bash pip install -e . ``` -Run the code with +Run the code with: -``` +``` bash template-python ``` -# Build docs +The `test`, `docs` and `dev` extras install the test runner, the +documentation tooling and the linters: +``` bash +pip install -e ".[dev]" ``` -make html -cd ../ -open docs/_build/html/index.html -``` - -# Publishing on PyPI -This project is configured to automatically publish to PyPI using GitHub Actions with trusted publishing (OIDC). +## Development -## Setup (One-time configuration) +Formatting and linting use [ruff](https://docs.astral.sh/ruff/), run by +[pre-commit](https://pre-commit.com/) and in CI: -### 1. Create PyPI Account and Project +``` bash +pre-commit install # once +pre-commit run --all-files +pytest . +``` -1. Create an account on [PyPI](https://pypi.org/) -2. Create a new project or claim your project name +## Build docs -### 2. Configure Trusted Publishing on PyPI +The documentation in `docs/` is an Astro + Starlight site: hand-written +pages, the notebooks in `tutorials/` executed and published as pages, +and the API reference generated from the docstrings with +[starlight-pydocs](https://ewels.github.io/starlight-pydocs/). It needs +Node 22 or newer. -1. Go to your PyPI project settings -2. Navigate to "Publishing" → "Add a new publisher" -3. Configure the trusted publisher with these details: - - **PyPI Project Name**: `template-python` (or your project name) - - **Owner**: Your GitHub username/organization - - **Repository name**: `template-python` - - **Workflow name**: `publish_pypi.yml` - - **Environment name**: `pypi` +``` bash +make docs-install # npm packages and the Python docs extra +make docs-notebooks # execute tutorials/*.ipynb and convert them to pages +make docs-dev # live preview at http://localhost:4321/template-python/ +make docs-build # the static site in docs/dist +``` -### 3. Configure GitHub Environment (Optional but Recommended) +## Build the README -1. Go to your GitHub repository → Settings → Environments -2. Create an environment named `pypi` -3. Add protection rules: - - Deployment branches: Only `main` branch +`README.md` is rendered from `README.qmd` with +[Quarto](https://quarto.org/): -## Publishing Process +``` bash +make readme +``` -Once configured, publishing is automatic: +## Publishing on PyPI -1. **Merge to main branch**: Any push to the `main` branch triggers the workflow -2. **Automatic build**: The workflow builds the Python package -3. **Automatic publish**: The package is automatically published to PyPI using trusted publishing +Pushes to `main` publish the package to PyPI with GitHub Actions and +trusted publishing (OIDC). The one-time PyPI and GitHub configuration is +described in the [publishing +guide](https://max-models.github.io/template-python/development/publishing/). diff --git a/README.qmd b/README.qmd new file mode 100644 index 0000000..79e056d --- /dev/null +++ b/README.qmd @@ -0,0 +1,96 @@ +--- +title: template-python +format: + gfm: + toc: false + preserve-yaml: false +--- + + + +Template repository for Python projects: a `src/` package with a console entry point, +`pytest` tests, GitHub Actions for tests, static analysis, tutorials, documentation and +PyPI publishing, and an [Astro](https://astro.build/) + [Starlight](https://starlight.astro.build/) +documentation site. + +Documentation: + +## Use the template + +Create a repository from this template, then rename the package: + +```bash +bash setup_project.sh my-app +rm setup_project.sh +``` + +This replaces `template-python` with `my-app` everywhere, moves `src/app` to `src/my_app`, +and points the entry point, tests and docs at it. + +## Install + +Create and activate a Python environment (3.10 or newer): + +```bash +python -m venv env +source env/bin/activate +pip install --upgrade pip +``` + +Install the code and requirements with pip: + +```bash +pip install -e . +``` + +Run the code with: + +```bash +template-python +``` + +The `test`, `docs` and `dev` extras install the test runner, the documentation tooling and +the linters: + +```bash +pip install -e ".[dev]" +``` + +## Development + +Formatting and linting use [ruff](https://docs.astral.sh/ruff/), run by +[pre-commit](https://pre-commit.com/) and in CI: + +```bash +pre-commit install # once +pre-commit run --all-files +pytest . +``` + +## Build docs + +The documentation in `docs/` is an Astro + Starlight site: hand-written pages, the notebooks +in `tutorials/` executed and published as pages, and the API reference generated from the +docstrings with [starlight-pydocs](https://ewels.github.io/starlight-pydocs/). It needs +Node 22 or newer. + +```bash +make docs-install # npm packages and the Python docs extra +make docs-notebooks # execute tutorials/*.ipynb and convert them to pages +make docs-dev # live preview at http://localhost:4321/template-python/ +make docs-build # the static site in docs/dist +``` + +## Build the README + +`README.md` is rendered from `README.qmd` with [Quarto](https://quarto.org/): + +```bash +make readme +``` + +## Publishing on PyPI + +Pushes to `main` publish the package to PyPI with GitHub Actions and trusted publishing +(OIDC). The one-time PyPI and GitHub configuration is described in the +[publishing guide](https://max-models.github.io/template-python/development/publishing/). diff --git a/docs/.gitignore b/docs/.gitignore new file mode 100644 index 0000000..f5661a2 --- /dev/null +++ b/docs/.gitignore @@ -0,0 +1,8 @@ +# Astro +dist/ +.astro/ +node_modules/ +# generated by docs/tools/notebooks.py (regenerated in CI) +.cache/ +public/tutorials/ +src/content/docs/tutorials/*.mdx diff --git a/docs/Makefile b/docs/Makefile deleted file mode 100644 index d0c3cbf..0000000 --- a/docs/Makefile +++ /dev/null @@ -1,20 +0,0 @@ -# Minimal makefile for Sphinx documentation -# - -# You can set these variables from the command line, and also -# from the environment for the first two. -SPHINXOPTS ?= -SPHINXBUILD ?= sphinx-build -SOURCEDIR = source -BUILDDIR = build - -# Put it first so that "make" without argument is like "make help". -help: - @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) - -.PHONY: help Makefile - -# Catch-all target: route all unknown targets to Sphinx using the new -# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). -%: Makefile - @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/docs/astro.config.mjs b/docs/astro.config.mjs new file mode 100644 index 0000000..eac0d6a --- /dev/null +++ b/docs/astro.config.mjs @@ -0,0 +1,88 @@ +// @ts-check +import { defineConfig } from 'astro/config'; +import { unified } from '@astrojs/markdown-remark'; +import starlight from '@astrojs/starlight'; +import starlightLinksValidator from 'starlight-links-validator'; +import starlightPydocs, { pydocsSidebarGroup } from 'starlight-pydocs'; +import rehypeKatex from 'rehype-katex'; +import remarkMath from 'remark-math'; + +// The site is served at https://max-models.github.io/template-python/ by GitHub Pages. +const base = '/template-python'; + +// The Python package documented under "API reference" (the directory name in src/). +const pythonPackage = 'app'; + +export default defineConfig({ + site: 'https://max-models.github.io', + base, + markdown: { + // $...$ and $$...$$ math in Markdown and MDX pages, rendered with KaTeX at build time + processor: unified({ remarkPlugins: [remarkMath], rehypePlugins: [rehypeKatex] }), + }, + integrations: [ + starlight({ + title: 'template-python', + description: 'Template repository for Python projects.', + customCss: ['katex/dist/katex.min.css', './src/styles/custom.css'], + components: { + Header: './src/components/Header.astro', + }, + social: [ + { icon: 'github', label: 'GitHub', href: 'https://github.com/max-models/template-python' }, + ], + plugins: [ + starlightPydocs({ + packages: [ + { + name: pythonPackage, + label: 'All modules', + search: ['../src'], + docstringStyle: 'google', + members: { + exclude: [`${pythonPackage}.tests`, `${pythonPackage}.tests.*`], + }, + sourceLink: { + host: 'github', + repo: 'max-models/template-python', + ref: 'main', + root: '..', + }, + sidebar: { collapsed: false }, + }, + ], + // The interpreter griffe runs in (set by `make docs-*`); falls back to uvx / python. + runner: process.env.DOCS_PYTHON ? { python: process.env.DOCS_PYTHON } : undefined, + inventories: ['python', { url: 'https://numpy.org/doc/stable/objects.inv' }], + }), + ...(process.env.DOCS_VALIDATE_LINKS === 'false' + ? [] + : [starlightLinksValidator({ errorOnLocalLinks: false, exclude: [`${base}/api/**`, '/api/**'] })]), + ], + sidebar: [ + { + label: 'Getting started', + items: [ + { label: 'Installation', slug: 'getting-started/installation' }, + { label: 'Quickstart', slug: 'getting-started/quickstart' }, + ], + }, + { + label: 'Tutorials', + items: [{ autogenerate: { directory: 'tutorials' } }], + }, + { + label: 'Development', + items: [ + { label: 'Building the docs', slug: 'development/docs' }, + { label: 'Publishing', slug: 'development/publishing' }, + ], + }, + { + label: 'API reference', + items: [pydocsSidebarGroup], + }, + ], + }), + ], +}); diff --git a/docs/make.bat b/docs/make.bat deleted file mode 100644 index 747ffb7..0000000 --- a/docs/make.bat +++ /dev/null @@ -1,35 +0,0 @@ -@ECHO OFF - -pushd %~dp0 - -REM Command file for Sphinx documentation - -if "%SPHINXBUILD%" == "" ( - set SPHINXBUILD=sphinx-build -) -set SOURCEDIR=source -set BUILDDIR=build - -%SPHINXBUILD% >NUL 2>NUL -if errorlevel 9009 ( - echo. - echo.The 'sphinx-build' command was not found. Make sure you have Sphinx - echo.installed, then set the SPHINXBUILD environment variable to point - echo.to the full path of the 'sphinx-build' executable. Alternatively you - echo.may add the Sphinx directory to PATH. - echo. - echo.If you don't have Sphinx installed, grab it from - echo.https://www.sphinx-doc.org/ - exit /b 1 -) - -if "%1" == "" goto help - -%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% -goto end - -:help -%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% - -:end -popd diff --git a/docs/package-lock.json b/docs/package-lock.json new file mode 100644 index 0000000..23558fb --- /dev/null +++ b/docs/package-lock.json @@ -0,0 +1,7108 @@ +{ + "name": "template-python-docs", + "version": "0.0.1", + "lockfileVersion": 3, + "requires": true, + "packages": { + "": { + "name": "template-python-docs", + "version": "0.0.1", + "dependencies": { + "@astrojs/markdown-remark": "^7.3.1", + "@astrojs/starlight": "^0.42.5", + "astro": "^7.3.5", + "katex": "^0.16.22", + "rehype-katex": "^7.0.1", + "remark-math": "^6.0.0", + "sharp": "^0.35.3", + "starlight-links-validator": "^0.26.0", + "starlight-pydocs": "0.2.1" 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"katex": "^0.16.22", + "rehype-katex": "^7.0.1", + "remark-math": "^6.0.0", + "sharp": "^0.35.3", + "starlight-links-validator": "^0.26.0", + "starlight-pydocs": "0.2.1" + }, + "devDependencies": { + "@mdx-js/mdx": "^3.1.0" + } +} diff --git a/docs/scripts/check-mdx.mjs b/docs/scripts/check-mdx.mjs new file mode 100644 index 0000000..7a94582 --- /dev/null +++ b/docs/scripts/check-mdx.mjs @@ -0,0 +1,37 @@ +// Compile every MDX page under src/content/docs with the site's markdown plugins and report the +// files that do not parse, with the line and the message. Runs in seconds, so a broken notebook +// conversion is found before the (slow) site build. +import { readdirSync, readFileSync, statSync } from 'node:fs'; +import { join, relative } from 'node:path'; +import { compile } from '@mdx-js/mdx'; +import remarkMath from 'remark-math'; +import rehypeKatex from 'rehype-katex'; + +const root = new URL('..', import.meta.url).pathname; +const content = join(root, 'src', 'content', 'docs'); + +function* walk(directory) { + for (const name of readdirSync(directory)) { + const path = join(directory, name); + if (statSync(path).isDirectory()) yield* walk(path); + else if (name.endsWith('.mdx')) yield path; + } +} + +let failures = 0; +let count = 0; +for (const file of walk(content)) { + count += 1; + const source = readFileSync(file, 'utf8').replace(/^---\n[\s\S]*?\n---\n/, (front) => + '\n'.repeat(front.split('\n').length - 1) + ); + try { + await compile(source, { remarkPlugins: [remarkMath], rehypePlugins: [rehypeKatex] }); + } catch (error) { + failures += 1; + const where = error.line ? `:${error.line}:${error.column ?? 0}` : ''; + console.error(`${relative(root, file)}${where}: ${error.reason ?? error.message}`); + } +} +console.log(`[check-mdx] ${count - failures} of ${count} MDX files compile`); +if (failures) process.exit(1); diff --git a/docs/source/_static/custom.css b/docs/source/_static/custom.css deleted file mode 100644 index fb0ac08..0000000 --- a/docs/source/_static/custom.css +++ /dev/null @@ -1,93 +0,0 @@ -/* Improved toctree styling */ - -/* Main page toctree container */ -.toctree-wrapper { - margin: 2rem 0; -} - -/* Toctree list styling */ -.toctree-wrapper ul { - padding-left: 0; - list-style: none; -} - -/* Toctree list items */ -.toctree-wrapper li { - margin: 0.4rem 0; - padding: 0.6rem 1rem; - border-bottom: 1.5px solid #c5d1e0; - border-left: 3px solid transparent; - transition: all 0.2s ease; -} - -.toctree-wrapper li:hover { - border-left-color: #4f46e5; - background: rgba(79, 70, 229, 0.03); -} - -.toctree-wrapper li:last-child { - border-bottom: 1.5px solid #c5d1e0; -} - -/* Toctree links */ -.toctree-wrapper a.reference { - font-size: 1.1rem; - font-weight: 500; - color: #1a365d; - text-decoration: none; - display: inline-block; - transition: all 0.2s ease; - padding: 0.25rem 0; -} - -.toctree-wrapper a.reference:hover { - color: #2563eb; - transform: translateX(5px); -} - -/* Nested toctree items */ -.toctree-wrapper ul ul { - padding-left: 1.5rem; - margin-top: 0.3rem; -} - -.toctree-wrapper ul ul li { - margin: 0.25rem 0; - padding: 0.4rem 0.8rem; - border-bottom: 1px solid #dce4f0; - border-left: 2px solid transparent; -} - -.toctree-wrapper ul ul li:hover { - border-left-color: #6366f1; - background: rgba(99, 102, 241, 0.03); -} - -.toctree-wrapper ul ul a.reference { - font-size: 1rem; - font-weight: 400; - color: #4a5568; -} - -.toctree-wrapper ul ul a.reference:hover { - color: #4f46e5; -} - -/* Toctree caption */ -.toctree-wrapper p.caption { - font-size: 1.3rem; - font-weight: 600; - color: #1e3a5f; - margin-bottom: 1rem; - padding-bottom: 0.5rem; - border-bottom: 3px solid #4f46e5; -} - -/* Improve spacing on main page */ -div.section > .toctree-wrapper { - background: linear-gradient(135deg, #f0f4f8 0%, #e8eef5 100%); - padding: 1.5rem; - border-radius: 12px; - box-shadow: 0 4px 6px rgba(79, 70, 229, 0.08); - border: 1px solid #dce4f0; -} diff --git a/docs/source/api/index.rst b/docs/source/api/index.rst deleted file mode 100644 index d1bd8af..0000000 --- a/docs/source/api/index.rst +++ /dev/null @@ -1,13 +0,0 @@ -API Reference -============= - -This section contains the automatically generated Python API reference. - -Modules -------- - -.. autosummary:: - :toctree: _autosummary - :recursive: - - app diff --git a/docs/source/conf.py b/docs/source/conf.py deleted file mode 100644 index 406c718..0000000 --- a/docs/source/conf.py +++ /dev/null @@ -1,101 +0,0 @@ -# Configuration file for the Sphinx documentation builder. -# -# For the full list of built-in configuration values, see the documentation: -# https://www.sphinx-doc.org/en/master/usage/configuration.html -import os -import shutil -import sys -from pathlib import Path - -sys.path.insert(0, os.path.abspath("../src")) - -# Copy tutorial notebooks from project root to docs/source/tutorials/ -tutorials_source = Path(__file__).parent.parent.parent / "tutorials" -tutorials_dest = Path(__file__).parent / "tutorials" - -if tutorials_source.exists(): - tutorials_dest.mkdir(exist_ok=True) - for notebook in tutorials_source.glob("*.ipynb"): - shutil.copy2(notebook, tutorials_dest / notebook.name) - - -# -- Project information ----------------------------------------------------- -# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information - -project = "python-template" -copyright = "2025, Max" -author = "Max" - -# -- General configuration --------------------------------------------------- - -# Add any Sphinx extension module names here, as strings. They can be -# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom -# ones. -extensions = [ - "sphinx.ext.autodoc", - "sphinx.ext.autosummary", - "sphinx.ext.viewcode", - "sphinx.ext.napoleon", - "sphinxcontrib.mermaid", - "sphinx_design", - "nbsphinx", -] - -# Add any paths that contain templates here, relative to this directory. -templates_path = ["_templates"] - -# List of patterns, relative to source directory, that match files and -# directories to ignore when looking for source files. -# This pattern also affects html_static_path and html_extra_path. -exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**/.ipynb_checkpoints"] - -# nbsphinx configuration -nbsphinx_execute = "always" # Execute notebooks during build - - -# -- Options for HTML output ------------------------------------------------- - -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -# -html_theme = "sphinx_book_theme" - -html_theme_options = { - "repository_branch": "devel", - "show_toc_level": 2, - "secondary_sidebar_items": ["page-toc"], - "use_sidenotes": True, - "home_page_in_toc": True, - "collapse_navigation": False, - "navigation_depth": 2, - "icon_links": [ - { - "name": "GitHub", - "url": "https://github.com/max-models/template-projects/", - "icon": "fab fa-github", - "type": "fontawesome", - }, - { - "name": "⭐ Star us!", - "url": "https://github.com/max-models/template-projects/", - "icon": "fas fa-star", - "type": "fontawesome", - }, - ], -} - -# Add any paths that contain custom static files (such as style sheets) here, -# relative to this directory. They are copied after the builtin static files, -# so a file named "default.css" will overwrite the builtin "default.css". -breathe_separate_member_pages = False -html_theme = "sphinx_book_theme" -html_static_path = ["_static"] -html_css_files = ["custom.css"] - -autosummary_generate = True - -autodoc_default_options = { - "members": True, - "undoc-members": False, - "show-inheritance": True, -} diff --git a/docs/source/getting_started.rst b/docs/source/getting_started.rst deleted file mode 100644 index 4890f2d..0000000 --- a/docs/source/getting_started.rst +++ /dev/null @@ -1,11 +0,0 @@ -Getting Started -=============== - -Learn how to install and use `template-python`. - -.. toctree:: - :maxdepth: 1 - - guides/install - guides/quickstart - tutorials diff --git a/docs/source/guides/install.rst b/docs/source/guides/install.rst deleted file mode 100644 index 04922ba..0000000 --- a/docs/source/guides/install.rst +++ /dev/null @@ -1,30 +0,0 @@ -Installation -============ - -Create and activate python environment:: - - python -m venv env - source env/bin/activate - pip install --upgrade pip - -Install the code and requirements with pip:: - - pip install -e . - -Run the code with:: - - template-python - - -Build docs -========== - -:: - - make html - cd ../ - open docs/_build/html/index.html - - -.. toctree:: - :maxdepth: 1 diff --git a/docs/source/guides/quickstart.rst b/docs/source/guides/quickstart.rst deleted file mode 100644 index 4bea978..0000000 --- a/docs/source/guides/quickstart.rst +++ /dev/null @@ -1,16 +0,0 @@ -Quickstart -========== - -First, ensure that ``template-python`` is installed on your system. - -Basic Usage ------------ - -After installation, you can run the application with:: - - template-python - -For more details, see the :doc:`install` guide. - -.. toctree:: - :maxdepth: 1 diff --git a/docs/source/index.rst b/docs/source/index.rst deleted file mode 100644 index 85109c7..0000000 --- a/docs/source/index.rst +++ /dev/null @@ -1,11 +0,0 @@ -template-python Documentation -============================= - -Write the documentation of your python package here. - -.. toctree:: - :maxdepth: 1 - :caption: Documentation - - getting_started - api/index diff --git a/docs/source/tutorials.rst b/docs/source/tutorials.rst deleted file mode 100644 index fed41de..0000000 --- a/docs/source/tutorials.rst +++ /dev/null @@ -1,10 +0,0 @@ -Tutorials -========= - -Here are a few tutorials to help you get started. - -.. toctree:: - :maxdepth: 1 - :glob: - - tutorials/* diff --git a/docs/src/components/Header.astro b/docs/src/components/Header.astro new file mode 100644 index 0000000..d757699 --- /dev/null +++ b/docs/src/components/Header.astro @@ -0,0 +1,108 @@ +--- +// A top nav bar with the site title, a row of section links, then search, socials and theme. +// Starlight's default Header has no link row, so this replaces it. +import config from 'virtual:starlight/user-config'; +import LanguageSelect from 'virtual:starlight/components/LanguageSelect'; +import Search from 'virtual:starlight/components/Search'; +import SiteTitle from 'virtual:starlight/components/SiteTitle'; +import SocialIcons from 'virtual:starlight/components/SocialIcons'; +import ThemeSelect from 'virtual:starlight/components/ThemeSelect'; +import { withBase } from '../utils/base'; + +const shouldRenderSearch = + config.pagefind || config.components.Search !== '@astrojs/starlight/components/Search.astro'; + +const navLinks = [ + { label: 'Getting started', href: withBase('/getting-started/installation/'), section: withBase('/getting-started/') }, + { label: 'Tutorials', href: withBase('/tutorials/'), section: withBase('/tutorials/') }, + { label: 'Development', href: withBase('/development/docs/'), section: withBase('/development/') }, + { label: 'API', href: withBase('/api/app/'), section: withBase('/api/') }, +]; + +const { pathname } = Astro.url; +const isCurrent = (section: string) => pathname.startsWith(section); +--- + +
+
+ +
+ +
+ {shouldRenderSearch && } +
+
+ + + +
+
+ + diff --git a/docs/src/components/NotebookHeader.astro b/docs/src/components/NotebookHeader.astro new file mode 100644 index 0000000..2b7842d --- /dev/null +++ b/docs/src/components/NotebookHeader.astro @@ -0,0 +1,53 @@ +--- +// The strip at the top of a tutorial page: download the notebook and open it on GitHub +// (written by tools/notebooks.py). +import { withBase } from '../utils/base'; + +export interface Props { + /** Site-root path of the downloadable notebook under public/, e.g. "/tutorials/example-tutorial/example_tutorial.ipynb". */ + download: string; + /** Repository path of the notebook, e.g. "tutorials/example_tutorial.ipynb". */ + source: string; + /** "executed" (outputs from a run at build time) or "not run". */ + status?: 'executed' | 'not run'; +} +const { download, source, status = 'executed' } = Astro.props; +const github = `https://github.com/max-models/template-python/blob/main/${source}`; +const notes = { + executed: 'Run when the site was built.', + 'not run': 'Not run for this build: the outputs are missing.', +}; +--- + +
+ Download notebook + View on GitHub + {notes[status]} +
+ + diff --git a/docs/src/components/NotebookImage.astro b/docs/src/components/NotebookImage.astro new file mode 100644 index 0000000..dd8a448 --- /dev/null +++ b/docs/src/components/NotebookImage.astro @@ -0,0 +1,23 @@ +--- +// A static image output of a notebook cell, stored under public/ (written by tools/notebooks.py). +export interface Props { + /** Site-root path of the image, e.g. "/tutorials/example-tutorial/1.png". */ + src: string; + alt?: string; +} +const { src, alt = 'Notebook output' } = Astro.props; +const resolved = import.meta.env.BASE_URL.replace(/\/$/, '') + src; +--- + +{alt} + + diff --git a/docs/src/components/RawHtml.astro b/docs/src/components/RawHtml.astro new file mode 100644 index 0000000..6096ecc --- /dev/null +++ b/docs/src/components/RawHtml.astro @@ -0,0 +1,16 @@ +--- +// Rich HTML output of a notebook cell (pandas tables, etc.), inserted as is. +export interface Props { + html: string; +} +const { html } = Astro.props; +--- + +
+ + diff --git a/docs/src/content.config.ts b/docs/src/content.config.ts new file mode 100644 index 0000000..d9ee8c9 --- /dev/null +++ b/docs/src/content.config.ts @@ -0,0 +1,7 @@ +import { defineCollection } from 'astro:content'; +import { docsLoader } from '@astrojs/starlight/loaders'; +import { docsSchema } from '@astrojs/starlight/schema'; + +export const collections = { + docs: defineCollection({ loader: docsLoader(), schema: docsSchema() }), +}; diff --git a/docs/src/content/docs/development/docs.md b/docs/src/content/docs/development/docs.md new file mode 100644 index 0000000..51a37e1 --- /dev/null +++ b/docs/src/content/docs/development/docs.md @@ -0,0 +1,46 @@ +--- +title: Building the docs +description: How this documentation site is built from Markdown pages, notebooks and docstrings. +--- + +The site in `docs/` is built with [Astro](https://astro.build/) and +[Starlight](https://starlight.astro.build/). It has three kinds of pages: + +- **Hand-written pages** in `docs/src/content/docs/`, as Markdown or MDX. +- **Tutorials**, converted from the Jupyter notebooks in `tutorials/` by `docs/tools/notebooks.py`. + Each notebook is executed and its outputs (text, images, tables) are written into an MDX page. +- **API reference**, generated from the docstrings by + [starlight-pydocs](https://ewels.github.io/starlight-pydocs/), one page per module. + +## Requirements + +- Node 22 or newer. +- The package installed with the `docs` extra: `pip install -e ".[docs]"`. + +## Commands + +```bash +make docs-install # npm packages and the Python docs extra +make docs-notebooks # execute tutorials/*.ipynb and convert them to pages +make docs-dev # live preview at http://localhost:4321/template-python/ +make docs-build # the static site in docs/dist, as in CI +make docs-preview # serve docs/dist +make docs-clean # remove generated pages and build output +``` + +`make docs-notebooks` only reruns a notebook whose cells changed since the last run; pass +`FORCE=1` to rerun all of them. + +## Writing tutorials + +Put a notebook in `tutorials/`. Its first `# Heading` becomes the page title and the first +paragraph its description. Cell tags control the output: + +| Tag | Effect | +| ------------------ | ---------------------------------------- | +| `remove-cell` | the cell is left out of the page | +| `hide-input` | the code is hidden, the outputs are kept | +| `remove-output` | the outputs are left out | +| `raises-exception` | an error output is shown, not a failure | + +Math in `$...$` and `$$...$$` is rendered with KaTeX. diff --git a/docs/src/content/docs/development/publishing.md b/docs/src/content/docs/development/publishing.md new file mode 100644 index 0000000..64b41f5 --- /dev/null +++ b/docs/src/content/docs/development/publishing.md @@ -0,0 +1,32 @@ +--- +title: Publishing +description: Publish the package to PyPI and the documentation to GitHub Pages. +--- + +## Documentation + +The `Docs` workflow builds the site on every push and pull request to `main` and `devel`. It +executes the tutorials, generates the API reference and uploads the site. Pushes to `main` +also deploy it to GitHub Pages at https://max-models.github.io/template-python/. + +Enable GitHub Pages once in the repository settings, with "GitHub Actions" as the source. + +## PyPI + +The project is configured to publish to PyPI with GitHub Actions and trusted publishing (OIDC). + +### One-time configuration + +1. Create an account on [PyPI](https://pypi.org/) and create or claim your project name. +2. In the PyPI project settings go to "Publishing" → "Add a new publisher" and fill in: + - **PyPI project name**: `template-python` (or your project name) + - **Owner**: your GitHub username or organization + - **Repository name**: `template-python` + - **Workflow name**: `publish_pypi.yml` + - **Environment name**: `pypi` +3. Optionally, in the GitHub repository settings create an environment named `pypi` whose + deployment branches are limited to `main`. + +### Publishing process + +Any push to `main` triggers the workflow, which builds the package and publishes it to PyPI. diff --git a/docs/src/content/docs/getting-started/installation.md b/docs/src/content/docs/getting-started/installation.md new file mode 100644 index 0000000..f7335d4 --- /dev/null +++ b/docs/src/content/docs/getting-started/installation.md @@ -0,0 +1,36 @@ +--- +title: Installation +description: Create a Python environment and install template-python. +--- + +Create and activate a Python environment: + +```bash +python -m venv env +source env/bin/activate +pip install --upgrade pip +``` + +Install the package and its requirements with pip: + +```bash +pip install -e . +``` + +Run the code with: + +```bash +template-python +``` + +## Optional extras + +| Extra | Installs | +| ------ | ------------------------------------------------------- | +| `test` | `pytest` and `coverage` | +| `docs` | the notebook runner and griffe for the API reference | +| `dev` | formatters and linters, plus the `test` and `docs` extras | + +```bash +pip install -e ".[dev]" +``` diff --git a/docs/src/content/docs/getting-started/quickstart.md b/docs/src/content/docs/getting-started/quickstart.md new file mode 100644 index 0000000..8d8f3d5 --- /dev/null +++ b/docs/src/content/docs/getting-started/quickstart.md @@ -0,0 +1,26 @@ +--- +title: Quickstart +description: Run the command line entry point of template-python. +--- + +First, ensure that `template-python` is [installed](/template-python/getting-started/installation/). + +## Basic usage + +After installation, you can run the application with: + +```bash +template-python +``` + +which calls `app.main.main` and prints a greeting. + +## Use the package from Python + +```python +from app.main import main + +main() +``` + +See the [API reference](/template-python/api/app/) for every module and function. diff --git a/docs/src/content/docs/index.mdx b/docs/src/content/docs/index.mdx new file mode 100644 index 0000000..a362b60 --- /dev/null +++ b/docs/src/content/docs/index.mdx @@ -0,0 +1,43 @@ +--- +title: template-python +description: Template repository for Python projects. +template: splash +hero: + tagline: A starting point for a Python package with tests, CI, tutorials and an Astro documentation site. + actions: + - text: Get started + link: /template-python/getting-started/installation/ + icon: right-arrow + - text: View on GitHub + link: https://github.com/max-models/template-python + icon: external + variant: minimal +--- + +import { Card, CardGrid, LinkCard } from '@astrojs/starlight/components'; + +## What is included + + + + A `src/` layout with a console entry point, `pytest` tests and a `pyproject.toml` ready for PyPI. + + + GitHub Actions for tests, static analysis, tutorial execution, documentation and PyPI publishing. + + + Jupyter notebooks in `tutorials/` are executed and published as pages of this site. + + + Every module, class and function is documented from the docstrings with starlight-pydocs. + + + +## Start here + + + + + + + diff --git a/docs/src/content/docs/tutorials/index.md b/docs/src/content/docs/tutorials/index.md new file mode 100644 index 0000000..59df46c --- /dev/null +++ b/docs/src/content/docs/tutorials/index.md @@ -0,0 +1,12 @@ +--- +title: Tutorials +description: Notebooks from the tutorials directory, executed and published with their outputs. +sidebar: + order: 0 +--- + +Every notebook in `tutorials/` is executed when the site is built and published here with its +outputs. Download a notebook from its page to run the steps yourself. + +See [Building the docs](/template-python/development/docs/) for the cell tags that control what +is shown. diff --git a/docs/src/styles/custom.css b/docs/src/styles/custom.css new file mode 100644 index 0000000..fe5b85d --- /dev/null +++ b/docs/src/styles/custom.css @@ -0,0 +1,80 @@ +/* + * Palette: a warm paper/ink swap with a teal accent (shared with the other max-models sites). + * Replace the colours below to brand your own project. + */ + +:root { + /* dark mode */ + --sl-color-accent-low: #0d3a38; + --sl-color-accent: #63eee6; + --sl-color-accent-high: #b6f5f1; + --sl-color-white: #eeeadd; + --sl-color-text: #eeeadd; + --sl-color-text-accent: #63eee6; + --sl-color-text-invert: #07131d; + --sl-color-bg: #07131d; + --sl-color-bg-nav: #07131d; + --sl-color-bg-sidebar: #07131d; + --sl-color-bg-inline-code: #0b1a25; + --sl-color-bg-accent: #63eee6; + --sl-color-hairline-light: rgba(238, 234, 221, 0.2); + --sl-color-hairline: rgba(238, 234, 221, 0.14); + --sl-color-hairline-shade: #07131d; + --sl-color-gray-2: #a9b7bb; + --sl-color-gray-3: #8a9a9e; + --sl-color-gray-4: #6b7c80; + + --sl-font: system-ui, -apple-system, BlinkMacSystemFont, 'Segoe UI', sans-serif; +} + +:root[data-theme='light'] { + --sl-color-accent-low: #d9efee; + --sl-color-accent: #087f7b; + --sl-color-accent-high: #05504d; + --sl-color-white: #10222d; + --sl-color-text: #10222d; + --sl-color-text-accent: #087f7b; + --sl-color-text-invert: #f5f2e8; + --sl-color-bg: #f5f2e8; + --sl-color-bg-nav: #f5f2e8; + --sl-color-bg-sidebar: #f5f2e8; + --sl-color-bg-inline-code: #e8e5dc; + --sl-color-bg-accent: #087f7b; + --sl-color-hairline-light: rgba(16, 34, 45, 0.2); + --sl-color-hairline: rgba(16, 34, 45, 0.12); + --sl-color-hairline-shade: #e8e5dc; + --sl-color-gray-2: #52646b; + --sl-color-gray-3: #6c7d83; + --sl-color-gray-4: #8b9aa0; +} + +/* API reference: a hidden Markdown heading above an block feeds "On this page". */ +.sl-markdown-content .sl-heading-wrapper:has(+ section.pyd-member) { + position: absolute; + width: 1px; + height: 1px; + overflow: hidden; + clip-path: inset(50%); + white-space: nowrap; +} + +/* rectangular, low-radius buttons */ +.sl-link-button { + border-radius: 0.25rem; +} + +/* display math scrolls instead of overflowing on narrow screens */ +.sl-markdown-content .katex-display { + overflow-x: auto; + overflow-y: hidden; +} + +/* + * Let the text column fill the space between the sidebar and the "On this page" column. Starlight + * caps it at --sl-content-width (45rem); at 100% the TOC keeps its width and the content takes the rest. + */ +@media (min-width: 72rem) { + :root[data-has-sidebar] { + --sl-content-width: 100%; + } +} diff --git a/docs/src/utils/base.ts b/docs/src/utils/base.ts new file mode 100644 index 0000000..b50bc80 --- /dev/null +++ b/docs/src/utils/base.ts @@ -0,0 +1,5 @@ +/** Prefix a site-root-relative path ("/tutorials/foo/") with the site's base path. */ +export function withBase(path: string): string { + if (/^[a-z]+:\/\//.test(path)) return path; + return import.meta.env.BASE_URL.replace(/\/$/, '') + (path.startsWith('/') ? path : `/${path}`); +} diff --git a/docs/tools/notebooks.py b/docs/tools/notebooks.py new file mode 100644 index 0000000..fa8110d --- /dev/null +++ b/docs/tools/notebooks.py @@ -0,0 +1,422 @@ +"""Execute the notebooks in ``tutorials/`` and convert them into Starlight MDX pages. + +``execute`` + Runs each notebook with nbclient into ``docs/.cache/notebooks/.ipynb``. A notebook is + rerun only when the hash of its cells changes (``--force`` reruns all of them). +``convert`` + Writes ``docs/src/content/docs/tutorials/.mdx`` from the executed copy, the images into + ``docs/public/tutorials//`` and a downloadable copy of the notebook next to them. + Notebooks that have not been executed are converted without outputs (``--strict`` fails on + them, and on notebooks whose run raised). +``clean`` + Removes the cache, the generated pages and the public assets. + +Usage: python docs/tools/notebooks.py [options] +""" + +from __future__ import annotations + +import argparse +import base64 +import hashlib +import json +import re +import shutil +import sys +from pathlib import Path +from typing import Any + +DOCS = Path(__file__).resolve().parents[1] +REPO = DOCS.parent +NOTEBOOKS = REPO / "tutorials" +CACHE = DOCS / ".cache" / "notebooks" +CONTENT = DOCS / "src" / "content" / "docs" / "tutorials" +PUBLIC = DOCS / "public" / "tutorials" +COMPONENTS = "../../../components" + + +def slug_of(path: Path) -> str: + return re.sub(r"[^a-z0-9]+", "-", path.stem.lower()).strip("-") + + +def notebooks() -> list[Path]: + return sorted(NOTEBOOKS.glob("*.ipynb")) + + +# Execution ------------------------------------------------------------------------------- # + + +def cell_hash(path: Path) -> str: + nb = json.loads(path.read_text()) + cells = [ + { + "type": c["cell_type"], + "source": c["source"], + "tags": c.get("metadata", {}).get("tags", []), + } + for c in nb["cells"] + ] + return hashlib.sha256(json.dumps(cells, sort_keys=True).encode()).hexdigest()[:16] + + +def execute_notebook(path: Path, target: Path, timeout: int) -> None: + import nbformat + from nbclient import NotebookClient + + nb = nbformat.read(path, as_version=4) + client = NotebookClient( + nb, + timeout=timeout, + kernel_name="python3", + resources={"metadata": {"path": str(path.parent)}}, + ) + error = None + try: + client.execute() + except Exception as exc: # the partial outputs are still written for the page + error = f"{type(exc).__name__}: {exc}" + target.parent.mkdir(parents=True, exist_ok=True) + nbformat.write(nb, target) + error_file = target.with_suffix(".error") + if error: + error_file.write_text(error) + else: + error_file.unlink(missing_ok=True) + + +def cmd_execute(args: argparse.Namespace) -> None: + failed = [] + for path in notebooks(): + slug = slug_of(path) + target = CACHE / f"{slug}.ipynb" + key_file = CACHE / f"{slug}.key" + key = cell_hash(path) + if ( + not args.force + and target.exists() + and key_file.exists() + and key_file.read_text() == key + ): + print(f"[notebooks] {slug}: up to date") + continue + print(f"[notebooks] {slug}: executing", flush=True) + execute_notebook(path, target, args.timeout) + key_file.write_text(key) + error_file = target.with_suffix(".error") + if error_file.exists(): + failed.append(slug) + print(f"[notebooks] {slug}: FAILED: {error_file.read_text()}") + if failed: + print(f"[notebooks] {len(failed)} failed: {', '.join(failed)}") + sys.exit(1) + + +# Conversion: markdown ---------------------------------------------------------------------- # + +# Regions whose contents MDX must not touch: code fences, inline code and math. +_PROTECTED = re.compile( + r"(?P^(?P`{3,}|~{3,})[^\n]*\n.*?^(?P=ticks)[ \t]*$)" + r"|(?P\$\$.+?\$\$)" + r"|(?P\\\[.+?\\\])" + r"|(?P(?P`+).+?(?P=bt))" + r"|(?P(?\\\(.+?\\\))", + re.DOTALL | re.MULTILINE, +) +_VOID_TAGS = re.compile( + r"<(br|hr|img|input|meta|link|source)\b([^>]*?)\s*/?>", re.IGNORECASE +) +_TAG = re.compile(r"]*)?/?>") +_ANSI = re.compile(r"\x1b\[[0-9;]*[A-Za-z]") + + +def _escape_plain(text: str) -> str: + return ( + text.replace("{", "\\{") + .replace("}", "\\}") + .replace("<", "<") + .replace(">", ">") + ) + + +def _escape_text(text: str) -> str: + """Escape what MDX would parse in plain markdown text: braces, stray <, comments.""" + text = re.sub(r"", "", text, flags=re.DOTALL) + text = _VOID_TAGS.sub(lambda m: f"<{m.group(1)}{m.group(2)} />", text) + out = [] + position = 0 + for match in _TAG.finditer(text): + out.append(_escape_plain(text[position : match.start()])) + out.append( + re.sub(r'\sstyle="[^"]*"', "", match.group(0)) + ) # JSX wants style objects + position = match.end() + out.append(_escape_plain(text[position:])) + return "".join(out) + + +def sanitize_markdown(text: str) -> str: + """Make notebook markdown valid MDX, keeping code and math as they are.""" + out = [] + position = 0 + for match in _PROTECTED.finditer(text): + out.append(_escape_text(text[position : match.start()])) + chunk = match.group(0) + if match.group("bracket"): + out.append("\n$$\n" + chunk[2:-2].strip() + "\n$$\n") + elif match.group("paren"): + out.append("$" + chunk[2:-2].strip() + "$") + else: + out.append(chunk) + position = match.end() + out.append(_escape_text(text[position:])) + return "".join(out) + + +def _first_heading(markdown: str) -> tuple[str | None, str]: + """Split off the first ``# Title`` line; return (title, the rest).""" + lines = markdown.splitlines() + for i, line in enumerate(lines): + if line.strip().startswith("# "): + return line.strip()[2:].strip(), "\n".join(lines[:i] + lines[i + 1 :]) + if line.strip(): + break + return None, markdown + + +def _plain(text: str) -> str: + """Markdown to plain text for a title or description.""" + text = re.sub(r"\$\$.*?\$\$", "", text, flags=re.DOTALL) + text = re.sub(r"\$([^$]+)\$", r"\1", text) + text = re.sub(r"!\[[^\]]*\]\([^)]*\)", "", text) + text = re.sub(r"\[([^\]]+)\]\([^)]*\)", r"\1", text) + text = re.sub(r"[`*_#>{}]", "", text) + return re.sub(r"\s+", " ", text).strip() + + +def _description(markdown: str) -> str: + for paragraph in re.split(r"\n\s*\n", markdown): + stripped = paragraph.strip() + if not stripped or stripped.startswith(("#", "|", "-", "*", "```", "$$", "<")): + continue + plain = _plain(stripped) + if len(plain) > 20: + return plain[:200].rsplit(" ", 1)[0] + "…" if len(plain) > 200 else plain + return "" + + +def _yaml_string(value: str) -> str: + return json.dumps(value, ensure_ascii=False) + + +# Conversion: outputs ----------------------------------------------------------------------- # + + +class Page: + def __init__(self, slug: str) -> None: + self.slug = slug + self.public = PUBLIC / slug + self.components: set[str] = set() + self.errors: list[str] = [] + self.assets = 0 + + def asset(self, suffix: str) -> tuple[Path, str]: + self.assets += 1 + self.public.mkdir(parents=True, exist_ok=True) + name = f"{self.assets}{suffix}" + return self.public / name, f"/tutorials/{self.slug}/{name}" + + +def _fence(text: str, language: str = "text") -> str: + text = _ANSI.sub("", text).rstrip("\n") + if not text.strip(): + return "" + lines = text.splitlines() + if len(lines) > 200: + lines = ( + lines[:100] + [f"... ({len(lines) - 200} lines skipped) ..."] + lines[-100:] + ) + text = "\n".join(lines) + ticks = "```" + while ticks in text: + ticks += "`" + return f"{ticks}{language}\n{text}\n{ticks}" + + +def _text(value: Any) -> str: + return "".join(value) if isinstance(value, list) else str(value) + + +def merge_streams(outputs: list[dict]) -> list[dict]: + """Join consecutive stream outputs of the same stream (one print per line otherwise).""" + merged: list[dict] = [] + for output in outputs: + previous = merged[-1] if merged else None + if ( + output.get("output_type") == "stream" + and previous is not None + and previous.get("output_type") == "stream" + and previous.get("name") == output.get("name") + ): + previous["text"] = _text(previous["text"]) + _text(output.get("text", "")) + else: + merged.append(dict(output)) + return merged + + +def convert_output(output: dict, page: Page, tags: list[str], index: int) -> str: + kind = output.get("output_type") + if kind == "stream": + return _fence(_text(output.get("text", ""))) + if kind == "error": + if "raises-exception" not in tags: + page.errors.append( + f"cell {index}: {output.get('ename')}: {output.get('evalue')}" + ) + return _fence(_ANSI.sub("", "\n".join(output.get("traceback", [])))) + data = output.get("data", {}) + if "image/png" in data or "image/jpeg" in data: + mime = "image/png" if "image/png" in data else "image/jpeg" + path, url = page.asset(".png" if mime == "image/png" else ".jpg") + path.write_bytes(base64.b64decode(_text(data[mime]))) + page.components.add("NotebookImage") + return f'' + if "image/svg+xml" in data: + page.components.add("RawHtml") + return f"" + if "text/html" in data: + page.components.add("RawHtml") + return f"" + if "text/markdown" in data: + return sanitize_markdown(_text(data["text/markdown"])) + if "text/latex" in data: + return "\n$$\n" + _text(data["text/latex"]).strip().strip("$") + "\n$$\n" + if "text/plain" in data: + return _fence(_text(data["text/plain"])) + return "" + + +# Conversion: pages ------------------------------------------------------------------------- # + + +def convert_notebook(source: Path, executed: Path | None, order: int) -> Page: + import nbformat + + slug = slug_of(source) + nb = nbformat.read(executed or source, as_version=4) + page = Page(slug) + shutil.rmtree(page.public, ignore_errors=True) + title = None + description = "" + body = [] + for index, cell in enumerate(nb.cells): + tags = list(cell.metadata.get("tags", [])) + if "remove-cell" in tags: + continue + if cell.cell_type == "markdown": + text = cell.source + if title is None: + heading, text = _first_heading(text) + if heading: + title = _plain(heading) + if not description: + description = _description(text) + for name, bundle in cell.get("attachments", {}).items(): + for mime, payload in bundle.items(): + if mime.startswith("image/"): + path, url = page.asset(Path(name).suffix or ".png") + path.write_bytes(base64.b64decode(_text(payload))) + text = text.replace(f"attachment:{name}", url) + body.append(sanitize_markdown(text).strip()) + elif cell.cell_type == "code": + if cell.source.strip() and "hide-input" not in tags: + body.append(_fence(cell.source, "python")) + if "remove-output" in tags: + continue + for output in merge_streams(cell.get("outputs", [])): + converted = convert_output(output, page, tags, index) + if converted: + body.append(converted) + title = title or source.stem.replace("_", " ").capitalize() + imports = [f"import NotebookHeader from '{COMPONENTS}/NotebookHeader.astro';"] + imports += [ + f"import {name} from '{COMPONENTS}/{name}.astro';" + for name in sorted(page.components) + ] + page.public.mkdir(parents=True, exist_ok=True) + shutil.copy2(source, page.public / source.name) + status = "executed" if executed else "not run" + frontmatter = [ + "---", + f"title: {_yaml_string(title)}", + f"description: {_yaml_string(description or title)}", + "sidebar:", + f" order: {order}", + "---", + ] + header = ( + f'' + ) + text = ( + "\n".join(frontmatter) + "\n\n" + "\n".join(imports) + "\n\n" + header + "\n\n" + ) + text += "\n\n".join(part for part in body if part) + "\n" + CONTENT.mkdir(parents=True, exist_ok=True) + (CONTENT / f"{slug}.mdx").write_text(text) + return page + + +def cmd_convert(args: argparse.Namespace) -> None: + for stale in CONTENT.glob("*.mdx"): + stale.unlink() + problems = [] + for order, source in enumerate(notebooks(), start=1): + slug = slug_of(source) + executed = CACHE / f"{slug}.ipynb" + error_file = executed.with_suffix(".error") + page = convert_notebook(source, executed if executed.exists() else None, order) + state = "executed" if executed.exists() else "not run" + if error_file.exists(): + problems.append(f"{slug}: run failed: {error_file.read_text().strip()}") + elif not executed.exists(): + problems.append(f"{slug}: not executed") + problems += [f"{slug}: {error}" for error in page.errors] + print( + f"[notebooks] {slug}: {state}, {page.assets} assets -> {CONTENT / slug}.mdx" + ) + for problem in problems: + print(f"[notebooks] warning: {problem}") + if args.strict and problems: + sys.exit(1) + + +def cmd_clean(args: argparse.Namespace) -> None: + shutil.rmtree(CACHE, ignore_errors=True) + shutil.rmtree(PUBLIC, ignore_errors=True) + for page in CONTENT.glob("*.mdx"): + page.unlink() + + +def main(argv: list[str] | None = None) -> None: + parser = argparse.ArgumentParser( + description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter + ) + sub = parser.add_subparsers(dest="command", required=True) + execute = sub.add_parser("execute", help="run the notebooks whose cells changed") + execute.add_argument("--force", action="store_true", help="rerun every notebook") + execute.add_argument("--timeout", type=int, default=600, help="seconds per cell") + execute.set_defaults(func=cmd_execute) + convert = sub.add_parser("convert", help="write the MDX pages and assets") + convert.add_argument( + "--strict", action="store_true", help="fail on missing or failed runs" + ) + convert.set_defaults(func=cmd_convert) + clean = sub.add_parser("clean", help="remove the cache and generated files") + clean.set_defaults(func=cmd_clean) + args = parser.parse_args(argv) + args.func(args) + + +if __name__ == "__main__": + main() diff --git a/docs/tsconfig.json b/docs/tsconfig.json new file mode 100644 index 0000000..8bf91d3 --- /dev/null +++ b/docs/tsconfig.json @@ -0,0 +1,5 @@ +{ + "extends": "astro/tsconfigs/strict", + "include": [".astro/types.d.ts", "**/*"], + "exclude": ["dist"] +} diff --git a/pyproject.toml b/pyproject.toml index b27f9e9..b66eaca 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -16,32 +16,26 @@ classifiers = [ "Development Status :: 3 - Alpha", "Programming Language :: Python :: 3 :: Only", "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", ] dependencies = [ "numpy", ] optional-dependencies.dev = [ - "black[jupyter]", - "isort", + "jupyterlab", + "pre-commit", + "pyproject-fmt", "ruff", "template-python[test,docs]", ] -# https://medium.com/@pratikdomadiya123/build-project-documentation-quickly-with-the-sphinx-python-2a9732b66594 optional-dependencies.docs = [ + "griffe", "ipykernel", - "myst-parser", - "nbconvert", - "nbsphinx", - "jupyterlab", - "linkify-it-py", - "pre-commit", - "pyproject-fmt", - "sphinx", - "sphinx-book-theme", - "sphinxcontrib-mermaid", - "sphinx-design", + "nbclient>=0.10", + "nbformat>=5.10", ] optional-dependencies.test = [ "coverage", "pytest" ] urls."Source" = "https://github.com/max-models/template-python" @@ -50,5 +44,12 @@ scripts.template-python = "app.main:main" [tool.setuptools.packages.find] where = [ "src" ] -[tool.isort] -profile = "black" +[tool.ruff] +target-version = "py310" +line-length = 88 +extend-include = [ "*.ipynb" ] + +[tool.ruff.lint] +# pycodestyle, pyflakes, isort, pyupgrade and bugbear +select = [ "B", "E", "F", "I", "UP", "W" ] +ignore = [ "E501" ] # line length is handled by the formatter diff --git a/setup_project.sh b/setup_project.sh index a245bd0..9c47082 100755 --- a/setup_project.sh +++ b/setup_project.sh @@ -1,4 +1,11 @@ #!/usr/bin/env bash +# Turn the template into a project of your own: +# +# bash setup_project.sh my-app +# +# replaces "template-python" with "my-app" and "template_python" with "my_app" in every tracked +# file, moves the package src/app to src/my_app, points the entry point, tests, docs and the API +# reference at it, and removes the workflow that tests this script. set -euo pipefail # Get the directory where this script is located @@ -12,60 +19,56 @@ fi APPNAME="$1" APPNAME_UNDERSCORE="${APPNAME//-/_}" +PACKAGE="app" -# 1. Find and replace "template-python" with app name -grep -rl "template-python" . --exclude-dir=.git --exclude-dir=docs/build | while IFS= read -r file; do - LC_ALL=C sed -i.bak "s/template-python/${APPNAME}/g" "$file" - rm -f "${file}.bak" -done - -# Also replace template_python with appname_underscore -grep -rl "template_python" . --exclude-dir=.git --exclude-dir=docs/build | while IFS= read -r file; do - LC_ALL=C sed -i.bak "s/template_python/${APPNAME_UNDERSCORE}/g" "$file" - rm -f "${file}.bak" -done +if [[ ! "$APPNAME_UNDERSCORE" =~ ^[a-zA-Z_][a-zA-Z0-9_]*$ ]]; then + echo "Error: '$APPNAME' is not a valid package name (letters, digits, '-' and '_' only)" + exit 1 +fi -# 2. Move src/app to src/ -if [[ -d "src/app" ]]; then - mv src/app "src/${APPNAME_UNDERSCORE}" -else - echo "Error: src/app does not exist" +if [[ ! -d "src/${PACKAGE}" ]]; then + echo "Error: src/${PACKAGE} does not exist" exit 1 fi -# 3. Replace import in src/**/*.py and entry points -# from app.main import main -> from .main import main -# Also replace "app.main:main" -> ".main:main" in pyproject.toml +# Files to edit: everything except git internals, the npm packages and build output. +files() { + grep -rl "$1" . \ + --exclude-dir=.git --exclude-dir=node_modules --exclude-dir=dist --exclude-dir=.astro \ + --exclude-dir=.cache --exclude-dir=__pycache__ --exclude-dir=.venv --exclude-dir=env \ + --exclude=setup_project.sh || true +} -find src -type f -name "*.py" -print0 | while IFS= read -r -d '' file; do - LC_ALL=C sed -i.bak \ - "s/from app\.main import main/from ${APPNAME_UNDERSCORE}.main import main/g" \ - "$file" - rm -f "${file}.bak" -done +replace() { # replace in every file that contains + files "$1" | while IFS= read -r file; do + LC_ALL=C sed -i.bak "s#$1#$2#g" "$file" + rm -f "${file}.bak" + done +} -# Replace app.main:main entry point in pyproject.toml -if [[ -f "pyproject.toml" ]]; then - LC_ALL=C sed -i.bak "s/app\.main:main/${APPNAME_UNDERSCORE}.main:main/g" "pyproject.toml" - rm -f "pyproject.toml.bak" -fi +# 1. The project name: pyproject.toml, README, docs, workflows, ... +replace "template-python" "${APPNAME}" +replace "template_python" "${APPNAME_UNDERSCORE}" -# 4. Update docs/source/api/index.rst to reference the new module name -if [[ -f "docs/source/api/index.rst" ]]; then - LC_ALL=C sed -i.bak "s/^ app$/ ${APPNAME_UNDERSCORE}/" "docs/source/api/index.rst" - rm -f "docs/source/api/index.rst.bak" -fi +# 2. Move the package +mv "src/${PACKAGE}" "src/${APPNAME_UNDERSCORE}" -# 5. Remove the test_setup_script.yml workflow since it's no longer needed -if [[ -f ".github/workflows/test_setup_script.yml" ]]; then - rm -f ".github/workflows/test_setup_script.yml" -fi +# 3. Imports, the entry point, the API reference and the docs links +replace "from ${PACKAGE}\\.main import main" "from ${APPNAME_UNDERSCORE}.main import main" +replace "${PACKAGE}\\.main:main" "${APPNAME_UNDERSCORE}.main:main" +replace "${PACKAGE}\\.main\\.main" "${APPNAME_UNDERSCORE}.main.main" +replace "/api/${PACKAGE}/" "/api/${APPNAME_UNDERSCORE}/" +replace "^const pythonPackage = '${PACKAGE}';" "const pythonPackage = '${APPNAME_UNDERSCORE}';" +# 4. Remove the workflow that tests this script +rm -f ".github/workflows/test_setup_script.yml" echo "Done:" echo " Replaced 'template-python' → '${APPNAME}'" echo " Replaced 'template_python' → '${APPNAME_UNDERSCORE}'" -echo " Moved src/app → src/${APPNAME_UNDERSCORE}" -echo " Replaced import statements and entry points" +echo " Moved src/${PACKAGE} → src/${APPNAME_UNDERSCORE}" +echo " Updated the imports, entry point, docs and API reference" echo " Removed .github/workflows/test_setup_script.yml" -echo "You can now remove this script with: rm setup_project.sh" +echo +echo "Next: update the GitHub links in pyproject.toml, docs/astro.config.mjs and" +echo "docs/src/components/NotebookHeader.astro, then remove this script with: rm setup_project.sh"