diff --git a/internal/devbox/docgen/docgen.go b/internal/devbox/docgen/docgen.go
index 5a9189b70ae..529154e0950 100644
--- a/internal/devbox/docgen/docgen.go
+++ b/internal/devbox/docgen/docgen.go
@@ -57,15 +57,19 @@ func GenerateReadme(
 		return err
 	}
 
+	cfg := devbox.Config()
+	scripts := cfg.Scripts().
+		WithRelativePaths(devbox.ProjectDir()).
+		InOrder(cfg.ScriptOrder())
+
 	return tmpl.Execute(f, map[string]any{
-		"Name":        devbox.Config().Root.Name,
-		"Description": devbox.Config().Root.Description,
-		"Scripts": devbox.Config().Scripts().
-			WithRelativePaths(devbox.ProjectDir()),
-		"EnvVars":  envWithRelativePaths(devbox.Config().Env(), devbox.ProjectDir()),
-		"InitHook": devbox.Config().InitHook(),
-		"Packages": devbox.TopLevelPackages(),
-		"Services": services,
+		"Name":        cfg.Root.Name,
+		"Description": cfg.Root.Description,
+		"Scripts":     scripts,
+		"EnvVars":     envWithRelativePaths(cfg.Env(), devbox.ProjectDir()),
+		"InitHook":    cfg.InitHook(),
+		"Packages":    devbox.TopLevelPackages(),
+		"Services":    services,
 		// TODO add includes
 	})
 }
diff --git a/internal/devbox/docgen/readme.tmpl b/internal/devbox/docgen/readme.tmpl
index 94d7309849b..72e60d3a734 100644
--- a/internal/devbox/docgen/readme.tmpl
+++ b/internal/devbox/docgen/readme.tmpl
@@ -28,8 +28,8 @@ devbox run <script>
 {{- if .Scripts }}
 ## Scripts
 Scripts are custom commands that can be run using this project's environment. This project has the following scripts:
-{{ range $name, $_ := .Scripts }}
-* [{{ $name }}](#devbox-run-{{ $name }})
+{{ range .Scripts }}
+* [{{ .Name }}](#devbox-run-{{ .Name }})
 {{- end }}
 {{ end }}
 
@@ -71,13 +71,13 @@ on `devbox shell` and on `devbox run`.
 
 {{- if .Scripts }}
 ## Script Details
-{{ range $name, $commands := .Scripts }}
-### devbox run {{ $name }}
+{{ range .Scripts }}
+### devbox run {{ .Name }}
 {{- if .Comments }}
 {{ .Comments }}
 {{-  end }}
 ```sh
-{{ $commands }}
+{{ .Commands }}
 ```
 &ensp;
 {{ end }}
diff --git a/internal/devconfig/config.go b/internal/devconfig/config.go
index 1151deb14a3..42a21a5a9dd 100644
--- a/internal/devconfig/config.go
+++ b/internal/devconfig/config.go
@@ -390,6 +390,19 @@ func (c *Config) Scripts() configfile.Scripts {
 	return scripts
 }
 
+// ScriptOrder returns script names in the order they are defined, with scripts
+// from included plugins first (matching Scripts' merge precedence) followed by
+// the root config's scripts. Duplicate names are de-duplicated by the consumer
+// (Scripts.InOrder).
+func (c *Config) ScriptOrder() []string {
+	var order []string
+	for _, i := range c.included {
+		order = append(order, i.ScriptOrder()...)
+	}
+	order = append(order, c.Root.ScriptOrder()...)
+	return order
+}
+
 func (c *Config) Hash() (string, error) {
 	data := []byte{}
 	for _, i := range c.included {
diff --git a/internal/devconfig/configfile/ast.go b/internal/devconfig/configfile/ast.go
index bd92c6fac47..3ebf4bd165e 100644
--- a/internal/devconfig/configfile/ast.go
+++ b/internal/devconfig/configfile/ast.go
@@ -395,6 +395,34 @@ func (c *configAST) appendStringSliceField(name, fieldName string, fieldValues [
 	c.root.Format()
 }
 
+// objectKeysInOrder walks the AST to the object at the given path and returns
+// its member names in the order they appear in the file. It returns nil if the
+// path doesn't resolve to an object (for example, when the field is missing).
+func (c *configAST) objectKeysInOrder(path ...string) []string {
+	elem := c.root
+	for _, key := range path {
+		obj, ok := elem.Value.(*hujson.Object)
+		if !ok {
+			return nil
+		}
+		i := c.memberIndex(obj, key)
+		if i == -1 {
+			return nil
+		}
+		elem = obj.Members[i].Value
+	}
+
+	obj, ok := elem.Value.(*hujson.Object)
+	if !ok {
+		return nil
+	}
+	names := make([]string, 0, len(obj.Members))
+	for i := range obj.Members {
+		names = append(names, obj.Members[i].Name.Value.(hujson.Literal).String())
+	}
+	return names
+}
+
 func (c *configAST) beforeComment(path ...any) []byte {
 	elem := c.root
 	for _, pathItem := range path {
diff --git a/internal/devconfig/configfile/scripts.go b/internal/devconfig/configfile/scripts.go
index 96c0e4b932b..b32efff9ecc 100644
--- a/internal/devconfig/configfile/scripts.go
+++ b/internal/devconfig/configfile/scripts.go
@@ -1,6 +1,7 @@
 package configfile
 
 import (
+	"slices"
 	"strings"
 
 	"go.jetify.com/devbox/internal/devbox/shellcmd"
@@ -13,6 +14,78 @@ type script struct {
 
 type Scripts map[string]*script
 
+// ScriptWithName pairs a script with its name so callers can iterate over
+// scripts in a deterministic order. Scripts are stored in a map, and Go's
+// text/template ranges over map keys in sorted (alphabetical) order, which
+// doesn't match the order scripts are defined in devbox.json. This type is
+// used when generating documentation so the output preserves the user's
+// ordering.
+type ScriptWithName struct {
+	Name     string
+	Commands *shellcmd.Commands
+	Comments string
+}
+
+// ScriptOrder returns the names of the scripts in the order they appear in the
+// devbox.json file. Names that can't be determined from the source file (for
+// example, when the config wasn't parsed from a file) are omitted; callers
+// should treat a missing name as "order unknown".
+func (c *ConfigFile) ScriptOrder() []string {
+	if c == nil || c.ast == nil {
+		return nil
+	}
+	return c.ast.objectKeysInOrder("shell", "scripts")
+}
+
+// InOrder returns the scripts as a slice ordered by the given names. Any
+// scripts not present in order (or when order is nil) are appended in
+// alphabetical order so the result stays deterministic.
+//
+// order may contain a name more than once when it's built by concatenating
+// multiple sources (e.g. included configs followed by the root config). In
+// that case only the last occurrence is used, so a script overridden by a
+// later definition appears at that definition's position. This matches the
+// merge precedence that produced its value in s (later definitions win).
+func (s Scripts) InOrder(order []string) []ScriptWithName {
+	result := make([]ScriptWithName, 0, len(s))
+	seen := make(map[string]bool, len(s))
+	add := func(name string) {
+		sc := s[name]
+		result = append(result, ScriptWithName{
+			Name:     name,
+			Commands: &sc.Commands,
+			Comments: sc.Comments,
+		})
+		seen[name] = true
+	}
+
+	lastIndex := make(map[string]int, len(order))
+	for i, name := range order {
+		lastIndex[name] = i
+	}
+	for i, name := range order {
+		if lastIndex[name] != i {
+			continue
+		}
+		if _, ok := s[name]; ok && !seen[name] {
+			add(name)
+		}
+	}
+
+	rest := make([]string, 0, len(s))
+	for name := range s {
+		if !seen[name] {
+			rest = append(rest, name)
+		}
+	}
+	slices.Sort(rest)
+	for _, name := range rest {
+		add(name)
+	}
+
+	return result
+}
+
 func (c *ConfigFile) Scripts() Scripts {
 	if c == nil || c.Shell == nil {
 		return nil
diff --git a/internal/devconfig/configfile/scripts_test.go b/internal/devconfig/configfile/scripts_test.go
new file mode 100644
index 00000000000..cc50266efce
--- /dev/null
+++ b/internal/devconfig/configfile/scripts_test.go
@@ -0,0 +1,113 @@
+package configfile
+
+import (
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+)
+
+// scriptNames returns just the names of the ordered scripts, for convenient
+// assertions.
+func scriptNames(scripts []ScriptWithName) []string {
+	names := make([]string, 0, len(scripts))
+	for _, s := range scripts {
+		names = append(names, s.Name)
+	}
+	return names
+}
+
+func TestScriptsInOrderPreservesSourceOrder(t *testing.T) {
+	config := []byte(`{
+		"shell": {
+			"scripts": {
+				"step-one": "echo one",
+				"step-two": "echo two",
+				"step-three": "echo three",
+				"step-four": "echo four"
+			}
+		}
+	}`)
+
+	cfg, err := LoadBytes(config)
+	require.NoError(t, err)
+
+	ordered := cfg.Scripts().InOrder(cfg.ScriptOrder())
+	assert.Equal(t,
+		[]string{"step-one", "step-two", "step-three", "step-four"},
+		scriptNames(ordered),
+	)
+}
+
+func TestScriptsInOrderFallsBackToAlphabetical(t *testing.T) {
+	// When no order is provided (e.g. the config wasn't parsed from a file),
+	// the result should be deterministic (alphabetical) rather than random
+	// map order.
+	scripts := Scripts{
+		"build": &script{},
+		"test":  &script{},
+		"clean": &script{},
+	}
+
+	ordered := scripts.InOrder(nil)
+	assert.Equal(t, []string{"build", "clean", "test"}, scriptNames(ordered))
+}
+
+func TestScriptsInOrderAppendsUnknownScripts(t *testing.T) {
+	// Scripts present in the map but missing from the order slice should be
+	// appended in alphabetical order, with no duplicates.
+	scripts := Scripts{
+		"first":  &script{},
+		"second": &script{},
+		"zeta":   &script{},
+		"alpha":  &script{},
+	}
+
+	ordered := scripts.InOrder([]string{"first", "second"})
+	assert.Equal(t,
+		[]string{"first", "second", "alpha", "zeta"},
+		scriptNames(ordered),
+	)
+}
+
+func TestScriptsInOrderDedupesKeepingLastOccurrence(t *testing.T) {
+	// When a script name appears more than once in order (e.g. defined in
+	// both an included config and the root config), it should appear once, at
+	// the position of its last occurrence — matching the merge precedence
+	// where the later (root) definition wins.
+	scripts := Scripts{
+		"shared":      &script{},
+		"plugin-only": &script{},
+		"root-only":   &script{},
+	}
+
+	// Simulates: included config order ["shared", "plugin-only"] followed by
+	// root config order ["root-only", "shared"]. "shared" is overridden by
+	// root, so it should follow root-only rather than lead.
+	order := []string{"shared", "plugin-only", "root-only", "shared"}
+
+	ordered := scripts.InOrder(order)
+	assert.Equal(t,
+		[]string{"plugin-only", "root-only", "shared"},
+		scriptNames(ordered),
+	)
+}
+
+func TestScriptsInOrderCarriesCommands(t *testing.T) {
+	config := []byte(`{
+		"shell": {
+			"scripts": {
+				"greet": ["echo hello", "echo world"]
+			}
+		}
+	}`)
+
+	cfg, err := LoadBytes(config)
+	require.NoError(t, err)
+
+	ordered := cfg.Scripts().InOrder(cfg.ScriptOrder())
+	require.Len(t, ordered, 1)
+	assert.Equal(t, "greet", ordered[0].Name)
+	require.NotNil(t, ordered[0].Commands)
+	assert.Equal(t, "echo hello\necho world", ordered[0].Commands.String())
+}