diff --git a/src/lib/libaddfunction.js b/src/lib/libaddfunction.js
index 195b5263df938..d0c4ec81e5288 100644
--- a/src/lib/libaddfunction.js
+++ b/src/lib/libaddfunction.js
@@ -114,7 +114,7 @@ addToLibrary({
 #endif
   },
 
-  $updateTableMap__deps: ['$getWasmTableEntry'],
+  $updateTableMap__deps: ['$getWasmTableEntry', '$functionsInTableMap'],
   $updateTableMap: (offset, count) => {
     if (functionsInTableMap) {
       for (var i = offset; i < offset + count; i++) {
diff --git a/src/lib/libcore.js b/src/lib/libcore.js
index f382ce245dcdd..73070bb830b2d 100644
--- a/src/lib/libcore.js
+++ b/src/lib/libcore.js
@@ -1408,6 +1408,7 @@ addToLibrary({
   $timers: {},
 
   $clearTimers__internal: true,
+  $clearTimers__deps: ['$timers'],
   $clearTimers: () => {
     for (var t of Object.values(timers)) {
       clearTimeout(t.id);
@@ -2079,9 +2080,12 @@ addToLibrary({
   emscripten_throw_string: (str) => { throw UTF8ToString(str); },
 
 #if !MINIMAL_RUNTIME
+  $handleException__deps: [
+    '$ExitStatus',
 #if STACK_OVERFLOW_CHECK
-  $handleException__deps: ['emscripten_stack_get_current'],
+    'emscripten_stack_get_current',
 #endif
+  ],
   $handleException: (e) => {
     // Certain exception types we do not treat as errors since they are used for
     // internal control flow.
diff --git a/src/lib/libdylink.js b/src/lib/libdylink.js
index 0c0b31aba402b..f4fe51f2fc3d9 100644
--- a/src/lib/libdylink.js
+++ b/src/lib/libdylink.js
@@ -16,7 +16,7 @@ const UNDEFINED_ADDR = to64(-1);
 
 var LibraryDylink = {
 #if FILESYSTEM
-  $registerWasmPlugin__deps: ['$preloadPlugins'],
+  $registerWasmPlugin__deps: ['$preloadPlugins', '$loadWebAssemblyModule', '$preloadedWasm'],
   $registerWasmPlugin: () => {
     // Use string keys here for public methods to avoid minification since the
     // plugin consumer also uses string keys.
@@ -310,7 +310,7 @@ var LibraryDylink = {
   },
 
   $reportUndefinedSymbols__internal: true,
-  $reportUndefinedSymbols__deps: ['$GOT', '$resolveGlobalSymbol'],
+  $reportUndefinedSymbols__deps: ['$GOT', '$resolveGlobalSymbol', '$addFunction'],
   $reportUndefinedSymbols: () => {
 #if DYLINK_DEBUG
     dbg('reportUndefinedSymbols');
@@ -393,7 +393,11 @@ var LibraryDylink = {
   // Allocate memory even if malloc isn't ready yet.  The allocated memory here
   // must be zero initialized since its used for all static data, including bss.
   $getMemory__noleakcheck: true,
-  $getMemory__deps: ['emscripten_get_sbrk_ptr', '__heap_base', '$alignMemory', 'calloc'],
+  // `__heap_base` is also used below, but is added via `REQUIRED_EXPORTS` in
+  // `link.py` rather than `__deps` because `wasm-ld` processes stub library
+  // dependencies before synthesizing optional symbols like `__heap_base`.
+  // See https://github.com/llvm/llvm-project/issues/180632
+  $getMemory__deps: ['emscripten_get_sbrk_ptr', '$alignMemory', 'calloc'],
   $getMemory: (size) => {
     // After the runtime is initialized, we must only use sbrk() normally.
 #if DYLINK_DEBUG
@@ -684,6 +688,9 @@ var LibraryDylink = {
     '$loadDynamicLibrary',
     '$getDylinkMetadata',
     '$instantiateModule',
+#if FILESYSTEM
+    '$findLibraryFS',
+#endif
   ],
   $loadWebAssemblyModule: (binary, flags, libName, localScope, handle) => {
 #if DYLINK_DEBUG
@@ -722,6 +729,7 @@ var LibraryDylink = {
   $instantiateModule__deps: [
     '$getMemory', '$updateGOT',
     '$relocateExports', '$resolveGlobalSymbol', '$GOTHandler',
+    '$reportUndefinedSymbols',
     '$alignMemory', '$updateTableMap',
     '$wasmTable', '$addOnPostCtor',
     '$addEmAsm', '$addEmJs',
@@ -996,6 +1004,7 @@ var LibraryDylink = {
   },
 #endif
 
+  $newDSO__deps: ['$LDSO'],
   $newDSO: (name, handle, syms) => {
     var dso = {
       refcount: Infinity,
@@ -1082,6 +1091,7 @@ var LibraryDylink = {
                               '$mergeLibSymbols', '$newDSO',
                               '$asyncLoad',
 #if FILESYSTEM
+                              '$FS',
                               '$preloadedWasm',
                               '$findLibraryFS',
 #endif
diff --git a/src/lib/libfs_shared.js b/src/lib/libfs_shared.js
index eb13e1e2f2a61..75dbcda876240 100644
--- a/src/lib/libfs_shared.js
+++ b/src/lib/libfs_shared.js
@@ -107,6 +107,7 @@ addToLibrary({
     return mode;
   },
 
+  $FS_fileDataToTypedArray__deps: ['$intArrayFromString'],
   $FS_fileDataToTypedArray: (data) => {
     if (typeof data === 'string') {
       data = intArrayFromString(data, true);
diff --git a/src/lib/libopenal.js b/src/lib/libopenal.js
index 397c1028be4c0..64902650f6afc 100644
--- a/src/lib/libopenal.js
+++ b/src/lib/libopenal.js
@@ -3274,6 +3274,7 @@ var LibraryOpenAL = {
   // alDopplerVelocity() sets a multiplier for the speed of sound.
   // It's deprecated since it's equivalent to directly calling
   // alSpeedOfSound() with an appropriately premultiplied value.
+  alDopplerVelocity__deps: ['$warnOnce'],
   alDopplerVelocity__proxy: 'sync',
   alDopplerVelocity: (value) => {
     warnOnce('alDopplerVelocity() is deprecated, and only kept for compatibility with OpenAL 1.0. Use alSpeedOfSound() instead.');
diff --git a/src/lib/libpthread.js b/src/lib/libpthread.js
index 9b2807e48d42a..df4687930deaa 100644
--- a/src/lib/libpthread.js
+++ b/src/lib/libpthread.js
@@ -81,15 +81,20 @@ const pthreadWorkerOptions = `{
 var LibraryPThread = {
   $PThread__postset: 'PThread.init();',
   $PThread__deps: ['_emscripten_thread_init',
+                   '$callUserCallback',
+                   '$checkMailbox',
                    '$terminateWorker',
                    '$cleanupThread',
-#if !MINIMAL_RUNTIME && PTHREAD_POOL_SIZE
+#if !MINIMAL_RUNTIME
+                   '$wasmMemory',
+#if PTHREAD_POOL_SIZE
                    '$addOnPreRun',
 #if !PTHREAD_POOL_DELAY_LOAD
                    '$addRunDependency',
                    '$removeRunDependency',
 #endif
 #endif
+#endif
 #if MAIN_MODULE
                    '$markAsFinished',
 #endif
diff --git a/src/lib/libwasm_worker.js b/src/lib/libwasm_worker.js
index dc5cd2ce3d5ad..d643645e8fc62 100644
--- a/src/lib/libwasm_worker.js
+++ b/src/lib/libwasm_worker.js
@@ -74,6 +74,7 @@ addToLibrary({
   // which these postponed function calls can be dispatched.
   $_wasmWorkerDelayedMessageQueue: [],
 
+  $_wasmWorkerAppendToQueue__deps: ['$_wasmWorkerDelayedMessageQueue'],
   $_wasmWorkerAppendToQueue: (e) => {
     _wasmWorkerDelayedMessageQueue.push(e);
   },
diff --git a/src/lib/libwebaudio.js b/src/lib/libwebaudio.js
index e3cb8d5e04376..23d464e4d4e08 100644
--- a/src/lib/libwebaudio.js
+++ b/src/lib/libwebaudio.js
@@ -161,6 +161,7 @@ var LibraryWebAudio = {
   // etc., but the created worklet does.
   _emscripten_create_audio_worklet__deps: [
     '$_emAudioDispatchProcessorCallback',
+    '$emAudio',
     '$stackAlloc', '$stackRestore', '$stackSave', '$HEAP32', '$HEAPU32', '$HEAPF32',
 #if WASM_BIGINT || MEMORY64
     '$HEAP64', '$HEAPU64',
diff --git a/test/codesize/audio_worklet_wasm.expected.js b/test/codesize/audio_worklet_wasm.expected.js
index 33b73ba3a777c..19d2688d03b02 100644
--- a/test/codesize/audio_worklet_wasm.expected.js
+++ b/test/codesize/audio_worklet_wasm.expected.js
@@ -102,9 +102,9 @@ u || (x = new WebAssembly.Memory({
     shared: !0
 }), y());
 
-var M = a => {
+var L = [], M = a => {
     L.push(a);
-}, L = [], N = a => {
+}, N = a => {
     a = a.data;
     var b = a._wsc;
     b && A.get(b)(...a.x);
@@ -114,7 +114,7 @@ var M = a => {
     a = a.data;
     var b = a._wsc;
     b && A.get(b)(...a.D);
-}, ca = (a, b, c, k, d, g, f) => {
+}, Q = {}, ca = (a, b, c, k, d, g, f) => {
     var l = Q[b], n = l.audioWorklet;
     d = () => {
         A.get(g)(b, 0, f);
@@ -159,7 +159,7 @@ var M = a => {
         } else k += String.fromCharCode(d);
     }
     return k;
-}, Q = {}, T = 0, ea = a => {
+}, T = 0, ea = a => {
     if (a) {
         var b = G[a >> 2];
         b = (b ? S(b) : "") || void 0;
diff --git a/test/codesize/hello_wasm_worker_wasm.expected.js b/test/codesize/hello_wasm_worker_wasm.expected.js
index 91cedd352ac24..732a8ca6e5191 100644
--- a/test/codesize/hello_wasm_worker_wasm.expected.js
+++ b/test/codesize/hello_wasm_worker_wasm.expected.js
@@ -16,9 +16,9 @@ e || (g = new WebAssembly.Memory({
     shared: !0
 }));
 
-var l = a => {
+var k = [], l = a => {
     k.push(a);
-}, k = [], n = a => {
+}, n = a => {
     a = a.data;
     var b = a._wsc;
     b && m.get(b)(...a.x);
diff --git a/test/codesize/test_codesize_file_preload.expected.js b/test/codesize/test_codesize_file_preload.expected.js
index 98a4f63d35151..38c676696afdf 100644
--- a/test/codesize/test_codesize_file_preload.expected.js
+++ b/test/codesize/test_codesize_file_preload.expected.js
@@ -663,6 +663,74 @@ var FS_createPreloadedFile = (parent, name, url, canRead, canWrite, onload, oner
   FS_preloadFile(parent, name, url, canRead, canWrite, dontCreateFile, canOwn, preFinish).then(onload).catch(onerror);
 };
 
+var lengthBytesUTF8 = str => {
+  var len = 0;
+  for (var i = 0; i < str.length; ++i) {
+    var u = str.codePointAt(i);
+    if (u <= 127) {
+      len++;
+    } else if (u <= 2047) {
+      len += 2;
+    } else if (u <= 65535) {
+      len += 3;
+    } else {
+      len += 4;
+      // Gotcha: if codePoint is over 0xFFFF, it is represented as a surrogate pair in UTF-16.
+      // We need to manually skip over the second code unit for correct iteration.
+      i++;
+    }
+  }
+  return len;
+};
+
+var stringToUTF8Array = (str, heap, outIdx, maxBytesToWrite) => {
+  // Parameter maxBytesToWrite is not optional. Negative values, 0, null,
+  // undefined and false each don't write out any bytes.
+  if (!(maxBytesToWrite > 0)) return 0;
+  var startIdx = outIdx;
+  var endIdx = outIdx + maxBytesToWrite - 1;
+  // -1 for string null terminator.
+  for (var i = 0; i < str.length; ++i) {
+    // For UTF8 byte structure, see http://en.wikipedia.org/wiki/UTF-8#Description
+    // and https://www.ietf.org/rfc/rfc2279.txt
+    // and https://tools.ietf.org/html/rfc3629
+    var u = str.codePointAt(i);
+    if (u <= 127) {
+      if (outIdx >= endIdx) break;
+      heap[outIdx++] = u;
+    } else if (u <= 2047) {
+      if (outIdx + 1 >= endIdx) break;
+      heap[outIdx++] = 192 | (u >> 6);
+      heap[outIdx++] = 128 | (u & 63);
+    } else if (u <= 65535) {
+      if (outIdx + 2 >= endIdx) break;
+      heap[outIdx++] = 224 | (u >> 12);
+      heap[outIdx++] = 128 | ((u >> 6) & 63);
+      heap[outIdx++] = 128 | (u & 63);
+    } else {
+      if (outIdx + 3 >= endIdx) break;
+      heap[outIdx++] = 240 | (u >> 18);
+      heap[outIdx++] = 128 | ((u >> 12) & 63);
+      heap[outIdx++] = 128 | ((u >> 6) & 63);
+      heap[outIdx++] = 128 | (u & 63);
+      // Gotcha: if codePoint is over 0xFFFF, it is represented as a surrogate pair in UTF-16.
+      // We need to manually skip over the second code unit for correct iteration.
+      i++;
+    }
+  }
+  // Null-terminate the pointer to the buffer.
+  heap[outIdx] = 0;
+  return outIdx - startIdx;
+};
+
+/** @type {function(string, boolean=, number=)} */ var intArrayFromString = (stringy, dontAddNull, length) => {
+  var len = length > 0 ? length : lengthBytesUTF8(stringy) + 1;
+  var u8array = new Array(len);
+  var numBytesWritten = stringToUTF8Array(stringy, u8array, 0, u8array.length);
+  if (dontAddNull) u8array.length = numBytesWritten;
+  return u8array;
+};
+
 var FS_fileDataToTypedArray = data => {
   if (typeof data === "string") {
     data = intArrayFromString(data, true);
@@ -1002,74 +1070,6 @@ var MEMFS = {
 
 var FS_stdin_getChar_buffer = [];
 
-var lengthBytesUTF8 = str => {
-  var len = 0;
-  for (var i = 0; i < str.length; ++i) {
-    var u = str.codePointAt(i);
-    if (u <= 127) {
-      len++;
-    } else if (u <= 2047) {
-      len += 2;
-    } else if (u <= 65535) {
-      len += 3;
-    } else {
-      len += 4;
-      // Gotcha: if codePoint is over 0xFFFF, it is represented as a surrogate pair in UTF-16.
-      // We need to manually skip over the second code unit for correct iteration.
-      i++;
-    }
-  }
-  return len;
-};
-
-var stringToUTF8Array = (str, heap, outIdx, maxBytesToWrite) => {
-  // Parameter maxBytesToWrite is not optional. Negative values, 0, null,
-  // undefined and false each don't write out any bytes.
-  if (!(maxBytesToWrite > 0)) return 0;
-  var startIdx = outIdx;
-  var endIdx = outIdx + maxBytesToWrite - 1;
-  // -1 for string null terminator.
-  for (var i = 0; i < str.length; ++i) {
-    // For UTF8 byte structure, see http://en.wikipedia.org/wiki/UTF-8#Description
-    // and https://www.ietf.org/rfc/rfc2279.txt
-    // and https://tools.ietf.org/html/rfc3629
-    var u = str.codePointAt(i);
-    if (u <= 127) {
-      if (outIdx >= endIdx) break;
-      heap[outIdx++] = u;
-    } else if (u <= 2047) {
-      if (outIdx + 1 >= endIdx) break;
-      heap[outIdx++] = 192 | (u >> 6);
-      heap[outIdx++] = 128 | (u & 63);
-    } else if (u <= 65535) {
-      if (outIdx + 2 >= endIdx) break;
-      heap[outIdx++] = 224 | (u >> 12);
-      heap[outIdx++] = 128 | ((u >> 6) & 63);
-      heap[outIdx++] = 128 | (u & 63);
-    } else {
-      if (outIdx + 3 >= endIdx) break;
-      heap[outIdx++] = 240 | (u >> 18);
-      heap[outIdx++] = 128 | ((u >> 12) & 63);
-      heap[outIdx++] = 128 | ((u >> 6) & 63);
-      heap[outIdx++] = 128 | (u & 63);
-      // Gotcha: if codePoint is over 0xFFFF, it is represented as a surrogate pair in UTF-16.
-      // We need to manually skip over the second code unit for correct iteration.
-      i++;
-    }
-  }
-  // Null-terminate the pointer to the buffer.
-  heap[outIdx] = 0;
-  return outIdx - startIdx;
-};
-
-/** @type {function(string, boolean=, number=)} */ var intArrayFromString = (stringy, dontAddNull, length) => {
-  var len = length > 0 ? length : lengthBytesUTF8(stringy) + 1;
-  var u8array = new Array(len);
-  var numBytesWritten = stringToUTF8Array(stringy, u8array, 0, u8array.length);
-  if (dontAddNull) u8array.length = numBytesWritten;
-  return u8array;
-};
-
 var FS_stdin_getChar = () => {
   if (!FS_stdin_getChar_buffer.length) {
     var result = null;
diff --git a/test/codesize/test_codesize_file_preload.json b/test/codesize/test_codesize_file_preload.json
index 6c1e178a3e7e6..14d23b775e57f 100644
--- a/test/codesize/test_codesize_file_preload.json
+++ b/test/codesize/test_codesize_file_preload.json
@@ -1,10 +1,10 @@
 {
   "a.out.js": 22169,
-  "a.out.js.gz": 9236,
+  "a.out.js.gz": 9244,
   "a.out.nodebug.wasm": 1198,
   "a.out.nodebug.wasm.gz": 730,
   "total": 23367,
-  "total_gz": 9966,
+  "total_gz": 9974,
   "sent": [
     "a (fd_write)"
   ],
diff --git a/test/codesize/test_codesize_hello_dylink.json b/test/codesize/test_codesize_hello_dylink.json
index 2082bdaa2e7b6..15ca5b6de0401 100644
--- a/test/codesize/test_codesize_hello_dylink.json
+++ b/test/codesize/test_codesize_hello_dylink.json
@@ -1,10 +1,10 @@
 {
-  "a.out.js": 26228,
-  "a.out.js.gz": 11156,
+  "a.out.js": 26229,
+  "a.out.js.gz": 11137,
   "a.out.nodebug.wasm": 16986,
   "a.out.nodebug.wasm.gz": 8667,
-  "total": 43214,
-  "total_gz": 19823,
+  "total": 43215,
+  "total_gz": 19804,
   "sent": [
     "__syscall_stat64",
     "emscripten_resize_heap",
diff --git a/test/codesize/test_codesize_hello_dylink_all.json b/test/codesize/test_codesize_hello_dylink_all.json
index b9418fa6e2aa4..4d4e9e1e31f10 100644
--- a/test/codesize/test_codesize_hello_dylink_all.json
+++ b/test/codesize/test_codesize_hello_dylink_all.json
@@ -1,7 +1,7 @@
 {
-  "a.out.js": 272705,
+  "a.out.js": 272704,
   "a.out.nodebug.wasm": 589443,
-  "total": 862148,
+  "total": 862147,
   "sent": [
     "IMG_Init",
     "IMG_Load",
diff --git a/test/codesize/test_codesize_minimal_pthreads.json b/test/codesize/test_codesize_minimal_pthreads.json
index 36439733e7e81..d7133be62a0cf 100644
--- a/test/codesize/test_codesize_minimal_pthreads.json
+++ b/test/codesize/test_codesize_minimal_pthreads.json
@@ -1,10 +1,10 @@
 {
-  "a.out.js": 6893,
-  "a.out.js.gz": 3411,
+  "a.out.js": 6889,
+  "a.out.js.gz": 3404,
   "a.out.nodebug.wasm": 19139,
   "a.out.nodebug.wasm.gz": 8819,
-  "total": 26032,
-  "total_gz": 12230,
+  "total": 26028,
+  "total_gz": 12223,
   "sent": [
     "a (memory)",
     "b (exit)",
diff --git a/test/codesize/test_codesize_minimal_pthreads_memgrowth.json b/test/codesize/test_codesize_minimal_pthreads_memgrowth.json
index ea983823bff5e..e209dad35c529 100644
--- a/test/codesize/test_codesize_minimal_pthreads_memgrowth.json
+++ b/test/codesize/test_codesize_minimal_pthreads_memgrowth.json
@@ -1,10 +1,10 @@
 {
-  "a.out.js": 7350,
-  "a.out.js.gz": 3624,
+  "a.out.js": 7346,
+  "a.out.js.gz": 3620,
   "a.out.nodebug.wasm": 19140,
   "a.out.nodebug.wasm.gz": 8820,
-  "total": 26490,
-  "total_gz": 12444,
+  "total": 26486,
+  "total_gz": 12440,
   "sent": [
     "a (memory)",
     "b (exit)",
diff --git a/test/codesize/test_minimal_runtime_code_size_hello_wasm_worker.json b/test/codesize/test_minimal_runtime_code_size_hello_wasm_worker.json
index dff9f01744b5e..99f623630e5ea 100644
--- a/test/codesize/test_minimal_runtime_code_size_hello_wasm_worker.json
+++ b/test/codesize/test_minimal_runtime_code_size_hello_wasm_worker.json
@@ -2,9 +2,9 @@
   "a.html": 509,
   "a.html.gz": 352,
   "a.js": 923,
-  "a.js.gz": 581,
+  "a.js.gz": 582,
   "a.wasm": 2661,
   "a.wasm.gz": 1479,
   "total": 4093,
-  "total_gz": 2412
+  "total_gz": 2413
 }
diff --git a/test/codesize/test_no_closure_code_size.json b/test/codesize/test_no_closure_code_size.json
index e326524c53eb8..e53f62fb90d23 100644
--- a/test/codesize/test_no_closure_code_size.json
+++ b/test/codesize/test_no_closure_code_size.json
@@ -12,9 +12,9 @@
   "strict.wasm": 1188,
   "strict.wasm.gz": 733,
   "files.js": 53250,
-  "files.js.gz": 14901,
+  "files.js.gz": 14880,
   "files.wasm": 371,
   "files.wasm.gz": 264,
   "total": 75918,
-  "total_gz": 24423
+  "total_gz": 24402
 }
diff --git a/tools/link.py b/tools/link.py
index 838e81125c207..062816b97464c 100644
--- a/tools/link.py
+++ b/tools/link.py
@@ -1278,7 +1278,12 @@ def limit_incoming_module_api():
       settings.INCLUDE_FULL_LIBRARY = 1
     # Called from preamble.js once the main module is instantiated.
     settings.DEFAULT_LIBRARY_FUNCS_TO_INCLUDE += ['$loadDylibs']
-    settings.REQUIRED_EXPORTS += ['__stack_pointer']
+    # `__stack_pointer` is exported for PIC side modules. `__heap_base` is used
+    # by `$getMemory` in `libdylink.js` (cannot be in `$getMemory__deps` because
+    # `wasm-ld` processes stub library dependencies before synthesizing optional
+    # symbols like `__heap_base`).
+    # See https://github.com/llvm/llvm-project/issues/180632
+    settings.REQUIRED_EXPORTS += ['__stack_pointer', '__heap_base']
 
   if settings.MAIN_MODULE == 1 or settings.SIDE_MODULE == 1:
     settings.LINKABLE = 1