diff --git a/src/jsifier.mjs b/src/jsifier.mjs
index 517f32de049da..d711dac771ba4 100644
--- a/src/jsifier.mjs
+++ b/src/jsifier.mjs
@@ -559,7 +559,7 @@ function(${args}) {
 
       // if the function was implemented in compiled code, there is no need to
       // include the js version
-      if (WASM_EXPORTS.has(symbol)) {
+      if (WASM_EXPORTS.has(symbol) && !WASM_IMPORTS.includes(symbol)) {
         return;
       }
 
diff --git a/src/settings_internal.js b/src/settings_internal.js
index e656c83fd455f..4adc2d495d478 100644
--- a/src/settings_internal.js
+++ b/src/settings_internal.js
@@ -16,6 +16,9 @@
 // underscore.
 var WASM_EXPORTS = [];
 
+// List of symbols imported from JavaScript
+var WASM_IMPORTS = [];
+
 // An array of all symbols exported from all the side modules specified on the
 // command line.
 // These are raw symbol names and are not mangled to include the leading
diff --git a/test/test_other.py b/test/test_other.py
index 7c38bfab2cad6..61c3c8b00dcef 100644
--- a/test/test_other.py
+++ b/test/test_other.py
@@ -1607,6 +1607,41 @@ def test_export_all(self):
     # Without the `-sEXPORT_ALL` these symbols will not be visible from JS
     self.do_runf('main.c', '_libf1 is not defined', assert_returncode=NON_ZERO, cflags=['-Oz', '-sMAIN_MODULE', '--pre-js', 'pre.js'])
 
+  def test_export_all_syscall_override(self):
+    create_file('main.c', r'''
+      #include "stdio.h"
+      #include <fcntl.h>
+
+      int syscall_openat_orig(int dirfd, intptr_t path, int flags, void* varags)
+          __attribute__((__import_module__("env"),
+                        __import_name__("__syscall_openat"), __warn_unused_result__));
+
+      int __syscall_openat(int dirfd, intptr_t path, int flags, void* varargs) {
+          printf("__syscall_openat!\n");
+          return syscall_openat_orig(dirfd, path, flags, varargs);
+      }
+
+      int main() {
+          int fd = open("a.c", O_RDONLY);
+          printf("fd: %d\n", fd);
+      }
+    ''')
+
+    self.do_runf('main.c', '__syscall_openat!', cflags=['-sEXPORT_ALL', '-sNODERAWFS'])
+    self.do_runf('main.c', '__syscall_openat!', cflags=['-sMAIN_MODULE', '-sNODERAWFS'])
+    self.do_runf('main.c', '__syscall_openat!', cflags=['-O2', '-sEXPORT_ALL', '-sMAIN_MODULE', '-sNODERAWFS'])
+    self.do_runf('main.c', '__syscall_openat!', cflags=['-sEXPORT_ALL', '-sMAIN_MODULE', '-sNODERAWFS'])
+
+    # Test with ES6 module output
+    self.run_process([EMCC, 'main.c', '-o', 'main.mjs', '-sEXPORT_ALL', '-sMAIN_MODULE', '-sNODERAWFS'])
+    create_file('run.mjs', '''
+    import {default as loadModule} from './main.mjs'
+
+    await loadModule();
+    ''')
+
+    self.assertContained('__syscall_openat!', self.run_js('run.mjs'))
+
   def test_export_keepalive(self):
     create_file('main.c', r'''
       #include <emscripten.h>
diff --git a/tools/emscripten.py b/tools/emscripten.py
index 2f3a484a8b7c0..ca206fba8d678 100644
--- a/tools/emscripten.py
+++ b/tools/emscripten.py
@@ -114,8 +114,10 @@ def update_settings_glue(wasm_file, metadata, base_metadata):
 
   if base_metadata:
     settings.WASM_EXPORTS = base_metadata.all_exports
+    settings.WASM_IMPORTS = base_metadata.imports
   else:
     settings.WASM_EXPORTS = metadata.all_exports
+    settings.WASM_IMPORTS = metadata.imports
   settings.HAVE_EM_ASM = bool(settings.MAIN_MODULE or len(metadata.em_asm_consts) != 0)
 
   if settings.MAIN_MODULE and settings.ASYNCIFY == 1:
@@ -969,7 +971,7 @@ def should_export(sym):
   return settings.EXPORT_ALL or (settings.EXPORT_KEEPALIVE and sym in settings.EXPORTED_FUNCTIONS)
 
 
-def create_receiving(function_exports, other_exports, library_symbols, aliases):
+def create_receiving(function_exports, other_exports, library_symbols, aliases, wasm_imports):
   generate_dyncall_assignment = 'dynCalls' in library_symbols
   receiving = ['\n// Imports from the Wasm binary.']
 
@@ -1019,6 +1021,7 @@ def create_receiving(function_exports, other_exports, library_symbols, aliases):
     # In debug builds we generate trapping functions in case
     # folks try to call/use a reference that was taken before the
     # wasm module is available.
+    wasm_imports_mangled = {asmjs_mangle(s) for s in wasm_imports}
     for sym in mangled:
       module_export = (settings.MODULARIZE or not settings.MINIMAL_RUNTIME) and should_export(sym) and settings.MODULARIZE != 'instance'
       if not js_manipulation.isidentifier(sym) and not module_export:
@@ -1029,7 +1032,11 @@ def create_receiving(function_exports, other_exports, library_symbols, aliases):
           assignment += f" = Module['{sym}']"
         else:
           assignment = f"Module['{sym}']"
-      receiving.append(f"{assignment} = makeInvalidEarlyAccess('{sym}');")
+      # Don't generate early access traps for symbols that are also wasm imports.
+      if sym in wasm_imports_mangled:
+        receiving.append(f"{assignment};")
+      else:
+        receiving.append(f"{assignment} = makeInvalidEarlyAccess('{sym}');")
   else:
     # Declare all exports in a single var statement
     sep = ',\n  '
@@ -1100,7 +1107,7 @@ def create_receiving(function_exports, other_exports, library_symbols, aliases):
 
 def create_module(metadata, function_exports, other_exports, library_symbols, aliases):
   module = []
-  module.append(create_receiving(function_exports, other_exports, library_symbols, aliases))
+  module.append(create_receiving(function_exports, other_exports, library_symbols, aliases, metadata.imports))
 
   sending = create_sending(metadata, library_symbols)
   if settings.WASM_ESM_INTEGRATION: