diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index f5763de4bb..48216414da 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -611,6 +611,8 @@ jobs:
 
     env:
       PY_COLORS: 1
+      MSYS2_ARG_CONV_EXCL: "*"
+      MSYS2_ENV_CONV_EXCL: "*"
 
     defaults:
       run:
diff --git a/docs/installation.rst b/docs/installation.rst
index 143533f7b2..ce85060ac3 100644
--- a/docs/installation.rst
+++ b/docs/installation.rst
@@ -327,6 +327,29 @@ Install the dependencies with the provided script::
 
     ./scripts/msys2-install-deps
 
+.. _msys2_path_translation:
+
+MSYS2 Path Translation
+++++++++++++++++++++++
+
+When running Borg within an MSYS2 environment, the shell
+automatically translates POSIX-style paths (like ``/tmp`` or ``/C/Users``) to
+Windows paths (like ``C:\msys64\tmp`` or ``C:\Users``) before they reach the
+Borg process.
+
+This behavior can result in absolute Windows paths being stored in your backups,
+which may not be what you intended if you use POSIX paths for portability.
+
+To disable this automatic translation for Borg, you can use environment variables
+to exclude everything from conversion. Similarly, MSYS2 also translates
+environment variables that look like paths. To disable this generally for Borg,
+set both variables::
+
+    export MSYS2_ARG_CONV_EXCL="*"
+    export MSYS2_ENV_CONV_EXCL="*"
+
+For more details, see the `MSYS2 documentation on filesystem paths <https://www.msys2.org/docs/filesystem-paths/>`__.
+
 Windows 10's Linux Subsystem
 ++++++++++++++++++++++++++++
 
diff --git a/src/borg/archiver/__init__.py b/src/borg/archiver/__init__.py
index 834bf7b5cf..438f0ea37c 100644
--- a/src/borg/archiver/__init__.py
+++ b/src/borg/archiver/__init__.py
@@ -46,6 +46,7 @@
     from ..helpers import ErrorIgnoringTextIOWrapper
     from ..helpers import msgpack
     from ..helpers import sig_int
+    from ..platformflags import is_win32, is_msystem
     from ..remote import RemoteRepository
     from ..selftest import selftest
 except BaseException:
@@ -455,7 +456,14 @@ def parse_args(self, args=None):
         return args
 
     def prerun_checks(self, logger, is_serve):
-
+        if not is_serve:
+            if is_win32 and is_msystem:
+                if "MSYS2_ARG_CONV_EXCL" not in os.environ or "MSYS2_ENV_CONV_EXCL" not in os.environ:
+                    logger.warning(
+                        "MSYS2 path translation is active. This can cause POSIX paths to be mangled into "
+                        "Windows paths in archives. Consider setting MSYS2_ARG_CONV_EXCL='*' and "
+                        "MSYS2_ENV_CONV_EXCL='*'. See https://www.msys2.org/docs/filesystem-paths/ for details."
+                    )
         selftest(logger)
 
     def _setup_implied_logging(self, args):
diff --git a/src/borg/platformflags.py b/src/borg/platformflags.py
index 9abf7d0652..cc84f7c7ac 100644
--- a/src/borg/platformflags.py
+++ b/src/borg/platformflags.py
@@ -4,6 +4,7 @@
 Use these flags instead of sys.platform.startswith('<os>') or try/except.
 """
 
+import os
 import sys
 
 is_win32 = sys.platform.startswith("win32")
@@ -15,3 +16,6 @@
 is_openbsd = sys.platform.startswith("openbsd")
 is_darwin = sys.platform.startswith("darwin")
 is_haiku = sys.platform.startswith("haiku")
+
+# MSYS2 (on Windows)
+is_msystem = is_win32 and "MSYSTEM" in os.environ