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Incorrect mapping of CHEK2
app: workerTask implementation touches the workerTask implementation touches the workertype: bugSomething isn't workingSomething isn't workingworkstream: clinicalTask relates to clinical featuresTask relates to clinical featuresStatus: Open.#107 In VariantEffect/dcd_mapping2;Migrate dcd_mapping from VRS
HaplotypetoCisPhasedBlock(requires dependency-stack modernization)app: mapperTask implementation touches the mapperTask implementation touches the mappertype: maintenanceMaintaining this projectMaintaining this projectStatus: Open.feat: Cross-level translation for multivariant assay inputs (haplotypes + multi-AA delins)
app: mapperTask implementation touches the mapperTask implementation touches the mappertype: featureNew featureNew featureworkstream: clinicalTask relates to clinical featuresTask relates to clinical featuresStatus: Open.#103 In VariantEffect/dcd_mapping2;- Status: Open.#102 In VariantEffect/dcd_mapping2;
feat: Redesign mapper output to produce MappingRecord + Allele rows at all levels
app: mapperTask implementation touches the mapperTask implementation touches the mappertype: featureNew featureNew featureworkstream: clinicalTask relates to clinical featuresTask relates to clinical featuresStatus: Open.#100 In VariantEffect/dcd_mapping2;Mark intronic variants with a dedicated consequence instead of raising a mapping error
app: backendTask implementation touches the backendTask implementation touches the backendapp: mapperTask implementation touches the mapperTask implementation touches the mappertype: enhancementNew feature or requestNew feature or requestStatus: Open.Decide on preferred form (and/or formalize current handling) for reference-identical HGVS variants
app: mapperTask implementation touches the mapperTask implementation touches the mappertype: discussionTeam discussion requiredTeam discussion requiredtype: enhancementNew feature or requestNew feature or requestStatus: Open.Define response protocols for mapping flags
app: mapperTask implementation touches the mapperTask implementation touches the mappertype: discussionTeam discussion requiredTeam discussion requiredtype: investigationInvestigation/exploration task for understanding requirementsInvestigation/exploration task for understanding requirementsStatus: Open.Surface alignment visualization on suspect mappings
app: backendTask implementation touches the backendTask implementation touches the backendapp: databaseTask implementation requires database changesTask implementation requires database changesapp: mapperTask implementation touches the mapperTask implementation touches the mappertype: enhancementNew feature or requestNew feature or requestStatus: Open.Flag alignment ambiguity when top candidates are close in score
app: backendTask implementation touches the backendTask implementation touches the backendapp: databaseTask implementation requires database changesTask implementation requires database changesapp: mapperTask implementation touches the mapperTask implementation touches the mappertype: enhancementNew feature or requestNew feature or requestStatus: Open.Extract and store reference sequence discrepancies from alignment output
app: backendTask implementation touches the backendTask implementation touches the backendapp: databaseTask implementation requires database changesTask implementation requires database changesapp: mapperTask implementation touches the mapperTask implementation touches the mappertype: enhancementNew feature or requestNew feature or requestStatus: Open.Implement a mapped variant status taxonomy
app: backendTask implementation touches the backendTask implementation touches the backendapp: databaseTask implementation requires database changesTask implementation requires database changesapp: mapperTask implementation touches the mapperTask implementation touches the mappertype: enhancementNew feature or requestNew feature or requestStatus: Open.