* [ ] better documentation overview targeted at specific user types * [ ] rewrite `SRAnonTool` to use less scripts or even integrate into a single application * [ ] tidy up all the different log locations and log files * [x] rewrite `semehr_anon.py` as a single application instead of calling other scripts * [ ] rewrite `semehr_annotate.sh` as a single application `semehr_annotate.py` instead of calling other scripts * [ ] move the anon and annotate template config files into a better location * [ ] move all applications into a single folder instead of everything in tools * [x] CI pipeline (copied from SmiServices?)
SRAnonToolto use less scripts or even integrate into a single applicationsemehr_anon.pyas a single application instead of calling other scriptssemehr_annotate.shas a single applicationsemehr_annotate.pyinstead of calling other scripts