PhenoProfiler/environment.yaml at main · QSong-github/PhenoProfiler · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
name: PhenoProfiler
channels:
  - pytorch
  - defaults
dependencies:
  - python=3.11
  - pip=24.0
  - cudatoolkit=11.8
  - numpy=1.26.3
  - pip:
    - torch==2.4.1
    - torchvision==0.19.1
    - torchaudio
    - -f https://download.pytorch.org/whl/cu118
    - anndata==0.10.9
    - scikit-image
    - matplotlib==3.9.3
    - matplotlib_venn==1.1.1
    - opencv_python==4.10.0.84
    - metrics==0.3.3
    - openpyxl==3.1.5
    - imageio==2.9.0
    - Pillow==11.0.0
    - imageio-ffmpeg==0.4.2
    - pandas==2.2.3
    - pycytominer==1.2.1
    - scanpy==1.10.4
    - scikit_learn==1.6.0
    - einops==0.3.0
    - torch-fidelity==0.3.0
    - torchmetrics==0.6.0
    - scipy==1.14.1
    - seaborn==0.13.2
    - shap==0.46.0
    - timm==1.0.12
    - tqdm==4.66.5
    - transformers==4.46.0